View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3140_low_26 (Length: 384)

Name: NF3140_low_26
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3140_low_26
NF3140_low_26
[»] chr8 (3 HSPs)
chr8 (1-373)||(36946909-36947281)
chr8 (321-362)||(5718451-5718492)
chr8 (326-370)||(5686299-5686343)
[»] chr4 (5 HSPs)
chr4 (318-370)||(24060631-24060683)
chr4 (327-370)||(5288577-5288620)
chr4 (321-370)||(42504198-42504247)
chr4 (323-362)||(16528629-16528668)
chr4 (288-368)||(2765331-2765419)
[»] scaffold0122 (1 HSPs)
scaffold0122 (318-370)||(18689-18741)
[»] chr7 (6 HSPs)
chr7 (321-369)||(44601056-44601104)
chr7 (321-370)||(21882773-21882822)
chr7 (321-370)||(46413747-46413796)
chr7 (321-365)||(20125650-20125694)
chr7 (327-370)||(46297668-46297711)
chr7 (327-367)||(8123749-8123789)
[»] chr1 (9 HSPs)
chr1 (321-370)||(10061647-10061696)
chr1 (321-370)||(21540129-21540178)
chr1 (321-370)||(43537149-43537198)
chr1 (318-365)||(26470004-26470051)
chr1 (301-362)||(23906591-23906651)
chr1 (325-370)||(35149672-35149717)
chr1 (321-367)||(29657422-29657468)
chr1 (328-362)||(33077750-33077784)
chr1 (327-367)||(4684526-4684566)
[»] chr5 (5 HSPs)
chr5 (324-367)||(7547323-7547366)
chr5 (321-370)||(3040264-3040313)
chr5 (327-367)||(20359971-20360011)
chr5 (321-370)||(30700874-30700923)
chr5 (318-370)||(30735322-30735374)
[»] chr2 (6 HSPs)
chr2 (323-366)||(14131215-14131258)
chr2 (322-367)||(37714481-37714526)
chr2 (327-362)||(3167959-3167994)
chr2 (321-367)||(38320204-38320250)
chr2 (325-370)||(27407477-27407522)
chr2 (298-362)||(5881413-5881476)
[»] chr6 (1 HSPs)
chr6 (323-370)||(6784708-6784755)
[»] chr3 (5 HSPs)
chr3 (321-367)||(1632866-1632912)
chr3 (321-367)||(2671961-2672007)
chr3 (321-367)||(34905904-34905950)
chr3 (324-370)||(45852941-45852987)
chr3 (326-367)||(18271972-18272013)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 36946909 - 36947281
Alignment:
Q  1 atcactttcgtatcggatactgttggcactttggcatcagctaccaccattgtcgtggtgctggattatgatggttatactaggtcgatatcgacatcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36946909 atcactttcgtatcggatactgttggcactttggcatcagctaccaccattgtcgtggtgctggattatgatggttatactaggtcgatatcgacatcta 36947008  T
Q  101 ggatcaacatgtggctcaaatgaccctcttcatgacactcttgataagttgaagtttacgttactactagtgtcaatttattttctattgttttttatca 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  36947009 ggatcaacatgtggctcaaatgaccctcttgatgacactcttgataagttgaagtttacgttactactggtgtcaatttattttcttttgttttttatca 36947108  T
Q  201 aatcaatctcaagctgtcggaggatttacaggttcggttagaattacattggccaaatctgttatctcacttaattaaatcttaggaaaatgcttgatac 300  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36947109 aatcaatctcaagttgtctgaggatttacaggttcggttagaattactttggccaaatctgttatctcacttaattaaatcttagggaaatgcttgatac 36947208  T
Q  301 agtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcattatctcccttcat 373  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||    
T  36947209 agtgacaaaatgtatcaaaaacagtgtatttattaacacatttctttaattatacatcattacctcccttcat 36947281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 5718451 - 5718492
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcatta 362  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  5718451 acagtgtatttgctaacacatttccttaattacacaccatta 5718492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 5686299 - 5686343
Alignment:
Q  326 gtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||||| ||||||||| || |||| |||||||    
T  5686299 gtatttgctaacacatttcattaattacatattattacctccctt 5686343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 24060683 - 24060631
Alignment:
Q  318 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  24060683 aaaacagtgtatttgctaacacatttccttaattacacaccattatctccctt 24060631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 5288620 - 5288577
Alignment:
Q  327 tatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  5288620 tatttgctaacacatttttttaattacacaccattatctccctt 5288577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 42504198 - 42504247
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||    
T  42504198 acagtgtatttgttaacacctttccttaattacacatcattacctccctt 42504247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 362
Target Start/End: Complemental strand, 16528668 - 16528629
Alignment:
Q  323 agtgtatttgctaacacatttctttaattacacatcatta 362  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  16528668 agtgtatttgttaacacatttctttaattacacaccatta 16528629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 368
Target Start/End: Original strand, 2765331 - 2765419
Alignment:
Q  288 aaatgcttgatacagtgacaaaatgtatcaaaa-------acagtgta-tttgctaacacatttctttaattacacatcattatctccc 368  Q
    |||||||||||| ||||||||||||||||||||       ||| |||| |||  |||||| |||| |||||||||||||||||||||||    
T  2765331 aaatgcttgatatagtgacaaaatgtatcaaaaattcaagacactgtatttttttaacacctttcattaattacacatcattatctccc 2765419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 18741 - 18689
Alignment:
Q  318 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  18741 aaaacagtgtatttgctaacacatttccttaattactcaccattatctccctt 18689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 44601104 - 44601056
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccct 369  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44601104 acagtgtatttgctaacacattttcttaattacacatcattatctccct 44601056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 21882773 - 21882822
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| |||||||    
T  21882773 acagtgtatttgctaacacttttccttaattacacaccattacctccctt 21882822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 46413747 - 46413796
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||    
T  46413747 acagtgtatttgttaacacctttccttaattacacatcattacctccctt 46413796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 20125694 - 20125650
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatct 365  Q
    |||||||||||||||| || |||||||||||||||| ||||||||    
T  20125694 acagtgtatttgctaatacctttctttaattacacaccattatct 20125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 46297711 - 46297668
Alignment:
Q  327 tatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||    
T  46297711 tatttgctaacacatttccttaattacacaccattaactccctt 46297668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 8123789 - 8123749
Alignment:
Q  327 tatttgctaacacatttctttaattacacatcattatctcc 367  Q
    ||||||||||||| |||||||||||| |||| |||||||||    
T  8123789 tatttgctaacacctttctttaattatacattattatctcc 8123749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 10061696 - 10061647
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  10061696 acagtttatttgctaacacatttccttaattacacatcattacctccctt 10061647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 21540178 - 21540129
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  21540178 acagtgtatttgttaacacctttctttaattacacttcattatctccctt 21540129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 43537149 - 43537198
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  43537149 acagtgtatttgttaacacatttctttaattacacaccattacctccctt 43537198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 26470051 - 26470004
Alignment:
Q  318 aaaacagtgtatttgctaacacatttctttaattacacatcattatct 365  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  26470051 aaaacagtgtatttgctaacacctttccttaattacacaccattatct 26470004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 23906591 - 23906651
Alignment:
Q  301 agtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcatta 362  Q
    ||||||||| |||||||| | || ||||||||||||||| |||||||||||||||| |||||    
T  23906591 agtgacaaactgtatcaaga-caatgtatttgctaacacctttctttaattacacaccatta 23906651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 35149672 - 35149717
Alignment:
Q  325 tgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||    
T  35149672 tgtatttgctaacacctttccttaattatacatcattatctccctt 35149717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 29657468 - 29657422
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    ||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  29657468 acagtgtatttgctaacacctttccttaattacatatcattacctcc 29657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 33077784 - 33077750
Alignment:
Q  328 atttgctaacacatttctttaattacacatcatta 362  Q
    |||||||||||||||| ||||||||||||||||||    
T  33077784 atttgctaacacatttatttaattacacatcatta 33077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 4684566 - 4684526
Alignment:
Q  327 tatttgctaacacatttctttaattacacatcattatctcc 367  Q
    ||||||||||||| |||| ||||||||||| ||||||||||    
T  4684566 tatttgctaacacctttccttaattacacaccattatctcc 4684526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 7547366 - 7547323
Alignment:
Q  324 gtgtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  7547366 gtgtatttgctaacacatttccttaattacaaatcattatctcc 7547323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 3040264 - 3040313
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| |||||||    
T  3040264 acagtgtatttgctaacacctttccttaattacacaccattacctccctt 3040313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 20360011 - 20359971
Alignment:
Q  327 tatttgctaacacatttctttaattacacatcattatctcc 367  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  20360011 tatttgctaacacctttctttaattacacaccattatctcc 20359971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 30700874 - 30700923
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||||| |||  ||||||||||| ||||| |||||||    
T  30700874 acagtgtatttgctaacaccttttcttaattacacaacattacctccctt 30700923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 30735322 - 30735374
Alignment:
Q  318 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||||||||||||| |||  |||||||| || ||||| |||||||    
T  30735322 aaaacagtgtatttgctaacactttttcttaattacccagcattacctccctt 30735374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 14131258 - 14131215
Alignment:
Q  323 agtgtatttgctaacacatttctttaattacacatcattatctc 366  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  14131258 agtgtatttgctaacacatttccttaattacacaccattatctc 14131215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 37714526 - 37714481
Alignment:
Q  322 cagtgtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||    
T  37714526 cagtgtatttgctaacacctttccttaattacacaccattatctcc 37714481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 3167994 - 3167959
Alignment:
Q  327 tatttgctaacacatttctttaattacacatcatta 362  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3167994 tatttgctaacacctttctttaattacacatcatta 3167959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 38320204 - 38320250
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    |||||||||||| ||||||||||| ||| ||||||||||||| ||||    
T  38320204 acagtgtatttgataacacatttccttatttacacatcattacctcc 38320250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 27407522 - 27407477
Alignment:
Q  325 tgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||| ||||||| ||||||||||| |||||||| ||||    
T  27407522 tgtatttgctaatacatttccttaattacacagcattatcttcctt 27407477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 5881413 - 5881476
Alignment:
Q  298 tacagtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcatta 362  Q
    |||| ||||||||||||| || | |||| |||||||||| || |||| |||||||||||||||||    
T  5881413 tacactgacaaaatgtattaata-cagtatatttgctaatacctttccttaattacacatcatta 5881476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 6784708 - 6784755
Alignment:
Q  323 agtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    ||||||||||||||||| |||  ||||||||||| |||||||||||||    
T  6784708 agtgtatttgctaacaccttttcttaattacacaccattatctccctt 6784755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 1632912 - 1632866
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    |||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  1632912 acagtgtatttgttaacacgtttctttaattacacaccattacctcc 1632866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 2672007 - 2671961
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    |||||||||||| |||||  |||| ||||||||||||||||||||||    
T  2672007 acagtgtatttgttaacatctttccttaattacacatcattatctcc 2671961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 34905950 - 34905904
Alignment:
Q  321 acagtgtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    ||||||||||||||||||| |||| ||||||| ||||||||| ||||    
T  34905950 acagtgtatttgctaacacctttccttaattatacatcattacctcc 34905904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 45852941 - 45852987
Alignment:
Q  324 gtgtatttgctaacacatttctttaattacacatcattatctccctt 370  Q
    |||||||||||||||| |||  ||||||||| |||||||||||||||    
T  45852941 gtgtatttgctaacaccttttcttaattacatatcattatctccctt 45852987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 18271972 - 18272013
Alignment:
Q  326 gtatttgctaacacatttctttaattacacatcattatctcc 367  Q
    |||||||||||||| |||||||||||||||| ||||| ||||    
T  18271972 gtatttgctaacacctttctttaattacacaccattacctcc 18272013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University