View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_29 (Length: 359)
Name: NF3140_low_29
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_29 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 218 - 359
Target Start/End: Original strand, 3950023 - 3950164
Alignment:
| Q |
218 |
agtcacaaatacaacataaaactcacacccataattccgaggtctcaggttggaacacaggtaatgaggtccaacctaacaatatcggtattgtcagtta |
317 |
Q |
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| T |
3950023 |
agtcacaaatacaacataaaactcacacccataactccgaggtctcgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagtta |
3950122 |
T |
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| Q |
318 |
agctaaactttacaaactcgtgataagaatataatagtacta |
359 |
Q |
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| T |
3950123 |
agctaaactttacaagctcgtggtaagaaaataatagtacta |
3950164 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 3949927 - 3950021
Alignment:
| Q |
82 |
aagttccatttgaagctttggtacattctatgtagaaagtgacttgctcatgaaacttcatatttacaattacaccaaatttatagttaaggaaa |
176 |
Q |
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| T |
3949927 |
aagttccatttcatgcattggttcattctaagtagaaagtgacttgctcattaaacatcatatttacaattacaccaaattcatagttaaggaaa |
3950021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 3949795 - 3949856
Alignment:
| Q |
14 |
tactatttgttcattcatggaaacccttcatgatgtggaaattggcaacaaaacataggaat |
75 |
Q |
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| T |
3949795 |
tactattcgttcattcatggaaacccttcaagatgtggaaattggcaacaaaacataggaat |
3949856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 44090606 - 44090563
Alignment:
| Q |
289 |
caacctaacaatatcggtattgtcagttaagctaaactttacaa |
332 |
Q |
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| T |
44090606 |
caacctaacaatatcagtattgtcagttgatctaaactttacaa |
44090563 |
T |
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