View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_3 (Length: 749)
Name: NF3140_low_3
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 40114413 - 40114858
Alignment:
| Q |
19 |
tgatgcttggtattggtttgtagataggtgtcggttgtattaaggatgggtagggaaaatggttgtcatagaagaccacatgacgggatgtgtatatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114413 |
tgatgcttggtattggtttgtagataggtgtcagttgtattaaggatgggtagggaaaatggttgtcatagaagaccacatgacgggatgtgtatatttt |
40114512 |
T |
|
| Q |
119 |
gtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccgacaaagatacacggttgagatttaggttggagtttgttgctattgtaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114513 |
gtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccaacaaagatacacggttgagatttaggttggagtttgttgctattgtaa |
40114612 |
T |
|
| Q |
219 |
ggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtgggtgatattatatgtttggttatgaagggtatgatagggtgttttcatattgagtg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114613 |
ggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtgggtgatattatatgtttggttatgaagggtatgatagggtgttttcatattgagtg |
40114712 |
T |
|
| Q |
319 |
ttggtgtgggcaacctgttgattagatatgctgctgtactaaatgcaaacgaccaaaattgagatggtaggttggcatgatgaggtaatgctctagcagt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40114713 |
ttggtgtgggcaacctgttgattagatatgctgctgtactaaatgcaagcgaccaaaattgagatggtaggttggcatgatgtagtaatgctctagcagt |
40114812 |
T |
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| Q |
419 |
ttctactatgtgtctatgtcttcgttcggcagaggaatttagttca |
464 |
Q |
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| T |
40114813 |
ttctactatgtgtctatgtcttcgttcggcagaggaatttagttca |
40114858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 493 - 749
Target Start/End: Original strand, 40114887 - 40115143
Alignment:
| Q |
493 |
atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaac |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40114887 |
atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagagaagttaaaatgtttctcaacaac |
40114986 |
T |
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| Q |
593 |
atttttaaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagcaatgatcaacaaatattagatagtat |
692 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40114987 |
atttttaaattgaggaaatatagtggagacatcagatttatttttcatgggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtat |
40115086 |
T |
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| Q |
693 |
aagaaaccatctaaggacctaacaggggctggtcgccatacatctgagtaaataatc |
749 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
40115087 |
aagaaaccatctaaggacctaacaggggctggtccccatacatcagagtaaataatc |
40115143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 618 - 736
Target Start/End: Original strand, 9006838 - 9006956
Alignment:
| Q |
618 |
gagacatcagatttatttttcataggaaaaagccaaatatattttgagcaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacag |
717 |
Q |
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||||||||||||||||||||||| ||| | | || ||||||||| ||| ||||||| |||||||||| || |||||| | |||||||||||||||| || |
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| T |
9006838 |
gagacatcagatttatttttcattggatataacccaatatatttggagaaatgatctacaaatattaagtaatataagtagccatctaaggacctaatag |
9006937 |
T |
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| Q |
718 |
gggctggtcgccatacatc |
736 |
Q |
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| T |
9006938 |
gagcagggccccatacatc |
9006956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 493 - 749
Target Start/End: Original strand, 656021 - 656275
Alignment:
| Q |
493 |
atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaac |
592 |
Q |
| |
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|||||||||| ||||| | ||| ||||||||||| ||| |||| || ||||| || || || || ||| | ||||| || ||||||| ||| | |||||| |
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| T |
656021 |
atataccattagaggagagataggattttagtttgatgtattccccaccattgtcagaatatagagaaatgataggcaaattaaaatattttttaacaac |
656120 |
T |
|
| Q |
593 |
atttttaaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagcaatgatcaacaaatattagatagtat |
692 |
Q |
| |
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| |||| |||| |||||| ||| | |||||||| ||||||||||||| ||| | | |||||||||||| | ||||||||||||| |||||||||||| |
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| T |
656121 |
acttttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtat |
656220 |
T |
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| Q |
693 |
aagaaaccatctaaggacctaacaggggctggtcgccatacatctgagtaaataatc |
749 |
Q |
| |
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||| |||||||||| ||||||| ||| ||||| |||||||||||||||||||||| |
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| T |
656221 |
aagtaaccatctaatgacctaataggagctgg--cccatacatctgagtaaataatc |
656275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 655584 - 655711
Alignment:
| Q |
49 |
tcggttgtattaaggatgggtagggaaaatggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggc |
148 |
Q |
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|||||||||| ||||||| || ||||| ||||| |||| |||||| ||||| || |||||||| |||| || ||| | ||||| | ||| ||||| || |
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| T |
655584 |
tcggttgtatcaaggatgtatatggaaagtggttatcatggaagacaacatggcgagatgtgtagattta-ttggttgtaggatctaagcaacgataagc |
655682 |
T |
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| Q |
149 |
atattgagatggtgagtaaccgacaaaga |
177 |
Q |
| |
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||||||||| |||||||| || ||||||| |
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| T |
655683 |
atattgagagggtgagtagcctacaaaga |
655711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 498 - 746
Target Start/End: Complemental strand, 3017740 - 3017492
Alignment:
| Q |
498 |
ccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaacatttt |
597 |
Q |
| |
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||||| || |||||| ||||| ||||||| ||| | ||||| ||||| || || || || ||| ||| || |||||||||| ||| ||||||| | || |
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| T |
3017740 |
ccatttgatgacaaaaaagatcttagtttaatgtactctccaccattgtcagaatatagagaaacaattggtaagttaaaatatttttcaacaagttatt |
3017641 |
T |
|
| Q |
598 |
taaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagcaatgatcaacaaatattagatagtataagaa |
697 |
Q |
| |
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| ||||||||||| | | ||||||||||| || |||||||| ||| | | ||| | |||||||| ||||||||||||| ||||||||||| ||| | |
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| T |
3017640 |
tgaattgaggaaaaagtgatgagacatcagacttgtttttcatgggatataaccatttgtattttgaataatgatcaacaaagattagatagtacaagta |
3017541 |
T |
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| Q |
698 |
accatctaaggacctaacaggggctggtcgccatacatctgagtaaata |
746 |
Q |
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| T |
3017540 |
gccatctaacgacctaatgggagcaggtccccatacatccgaataaata |
3017492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 262
Target Start/End: Complemental strand, 3018172 - 3017982
Alignment:
| Q |
72 |
ggaaaatggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccga |
171 |
Q |
| |
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|||||||||||||||| ||| || |||||||| || || || |||||||| ||| ||||||| || || ||||| |||||||| || ||||||||||| | |
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| T |
3018172 |
ggaaaatggttgtcatggaatacaacatgacgtgaagtataaattttgttggttttgggatctagacaacgatatgcatattgtgagggtgagtaaccaa |
3018073 |
T |
|
| Q |
172 |
caaagatacacggttgagatttaggttggagtttgttgctattgtaaggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtg |
262 |
Q |
| |
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|| ||||| | | |||||| ||||||||||| | | | |||||||| || |||||| ||||| | ||| ||||| ||||||||||| |
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| T |
3018072 |
tgaatatacatgatatagatttgggttggagtttatggtttgtgtaaggttttagccatgggaaacaaaggcatccaaaggagtgtaggtg |
3017982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 714
Target Start/End: Original strand, 23971201 - 23971296
Alignment:
| Q |
619 |
agacatcagatttatttttcataggaaaaagccaaatatattttgagcaatgatcaacaaatattagatagtataagaaaccatctaaggacctaa |
714 |
Q |
| |
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|||||||||| ||| |||||| ||| |||||||||| ||||| || ||||||||| ||| |||| ||| || | |||||||||||| ||||||| |
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| T |
23971201 |
agacatcagacttaaatttcattggataaagccaaatgtatttggaaaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaa |
23971296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 441
Target Start/End: Complemental strand, 3017878 - 3017797
Alignment:
| Q |
360 |
aatgcaaacgaccaaaattgagatggtaggttggcatgatgaggtaatgctctagcagtttctactatgtgtctatgtcttc |
441 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||| || | | ||||||||| ||||| |||| ||||||||||||| |
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| T |
3017878 |
aatgcaaatgaccaaaattgagatggtaaattagcatggtgtaggagtgctctagcggtttcagctatatgtctatgtcttc |
3017797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 714
Target Start/End: Original strand, 18187960 - 18188055
Alignment:
| Q |
619 |
agacatcagatttatttttcataggaaaaagccaaatatattttgagcaatgatcaacaaatattagatagtataagaaaccatctaaggacctaa |
714 |
Q |
| |
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|||||||||| ||| |||||| ||| |||||||||| ||||| ||| ||||||||| ||| |||| ||| || | |||||||||||| ||||||| |
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| T |
18187960 |
agacatcagacttaaatttcattggataaagccaaatgtatttggagaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaa |
18188055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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