View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3140_low_30 (Length: 357)

Name: NF3140_low_30
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3140_low_30
NF3140_low_30
[»] chr6 (2 HSPs)
chr6 (282-327)||(13848750-13848795)
chr6 (122-167)||(126868-126913)
[»] chr8 (6 HSPs)
chr8 (276-327)||(417366-417417)
chr8 (276-327)||(14029841-14029892)
chr8 (276-327)||(24516782-24516833)
chr8 (276-327)||(36803814-36803865)
chr8 (276-327)||(12877182-12877233)
chr8 (276-327)||(6337806-6337857)
[»] chr5 (4 HSPs)
chr5 (276-327)||(27261650-27261701)
chr5 (276-327)||(31170366-31170417)
chr5 (276-327)||(27265421-27265472)
chr5 (276-316)||(41873547-41873587)
[»] chr4 (3 HSPs)
chr4 (276-327)||(23317852-23317903)
chr4 (276-327)||(25922927-25922978)
chr4 (276-327)||(50997946-50997997)
[»] chr2 (2 HSPs)
chr2 (276-327)||(2387080-2387131)
chr2 (276-327)||(36216001-36216052)
[»] chr7 (4 HSPs)
chr7 (277-324)||(5094306-5094353)
chr7 (276-327)||(39751666-39751717)
chr7 (276-327)||(5098110-5098161)
chr7 (3-46)||(10612389-10612432)
[»] chr1 (2 HSPs)
chr1 (276-327)||(8026744-8026795)
chr1 (276-327)||(25650862-25650912)
[»] scaffold0035 (1 HSPs)
scaffold0035 (276-327)||(84054-84105)
[»] chr3 (1 HSPs)
chr3 (277-327)||(37975075-37975125)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 13848795 - 13848750
Alignment:
Q  282 atcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  13848795 atcatgcattcatttcaatttagttgaacgacttggcaaaaatcat 13848750  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 126868 - 126913
Alignment:
Q  122 aggaattcaagctaaaatatgggatattgacactaggtccatgcac 167  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||    
T  126868 aggaattcaagttaaaatatgggatattgacaccaagtccatgcac 126913  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 417417 - 417366
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  417417 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 417366  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 14029841 - 14029892
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  14029841 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 14029892  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 24516833 - 24516782
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  24516833 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 24516782  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 36803865 - 36803814
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  36803865 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 36803814  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 12877182 - 12877233
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  12877182 ccaaagatcatgcattcattcaaatttagttgaacgacttgacaaaaatcat 12877233  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 6337857 - 6337806
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||| | ||||||||||||||    
T  6337857 ccaaagatcatgcattcattcaaatttagttgaacaatttggcaaaaatcat 6337806  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 27261650 - 27261701
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  27261650 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 27261701  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 31170366 - 31170417
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  31170366 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 31170417  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 27265472 - 27265421
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    ||||||||||||||||  || ||||||||||||||  |||||||||||||||    
T  27265472 ccaaagatcatgcattcgttccaatttagttgaacagcttggcaaaaatcat 27265421  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 41873547 - 41873587
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttg 316  Q
    |||||||||||||||| |||  |||||||||||||||||||    
T  41873547 ccaaagatcatgcattcattcaaatttagttgaacgacttg 41873587  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 23317903 - 23317852
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  23317903 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 23317852  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 25922978 - 25922927
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  25922978 ccaaagatcatgcattcattccaatttagttgaacgacttgacaaaaatcat 25922927  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 50997997 - 50997946
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  50997997 ccaaagatcatgcattcattcaaatttagttgaacgacttgccaaaaatcat 50997946  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 2387131 - 2387080
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  2387131 ccaaagatcatgcattcattcaaatttagttgaacgacttggcaaaaatcat 2387080  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 36216052 - 36216001
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  36216052 ccaaagatcatgcattcattccaatttagttgaaccacttggcaaaaatcat 36216001  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 5094306 - 5094353
Alignment:
Q  277 caaagatcatgcattgatttcaatttagttgaacgacttggcaaaaat 324  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  5094306 caaagattatgcattcattccaatttagttgaacgacttggcaaaaat 5094353  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 39751666 - 39751717
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||| ||||||||||||||||    
T  39751666 ccaaagatcatgcattcattcaaatttagttgaaccacttggcaaaaatcat 39751717  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 5098161 - 5098110
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    ||||||||||||||||  || ||||||||||||||  |||||||||||||||    
T  5098161 ccaaagatcatgcattcgttccaatttagttgaacagcttggcaaaaatcat 5098110  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 10612432 - 10612389
Alignment:
Q  3 gtccatctccggagaatatatcgactgtaatttccttgattaat 46  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||    
T  10612432 gtccatctccggagaatatttcgagtgtaatttccttgactaat 10612389  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 8026744 - 8026795
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  8026744 ccaaagatcatgcattcattcaaatttagttgaacgacttgacaaaaatcat 8026795  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 25650912 - 25650862
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  25650912 ccaaagatcatgcattcattccaatttagttgaacgactt-gcaaaaatcat 25650862  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 84105 - 84054
Alignment:
Q  276 ccaaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||| |||  ||||||||||||||| || |||||||||||    
T  84105 ccaaagatcatgcattcattcaaatttagttgaacgattttgcaaaaatcat 84054  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 37975075 - 37975125
Alignment:
Q  277 caaagatcatgcattgatttcaatttagttgaacgacttggcaaaaatcat 327  Q
    |||||||||||||||  || ||||||||||||||  |||||||||||||||    
T  37975075 caaagatcatgcattcgttccaatttagttgaacagcttggcaaaaatcat 37975125  T

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