View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_33 (Length: 351)
Name: NF3140_low_33
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 112 - 336
Target Start/End: Original strand, 26596306 - 26596522
Alignment:
| Q |
112 |
ccttttcttcttcattttaaaaatcattaatcatctctttggatagatggatggaaagccaccaagaatcagtannnnnnnnctctctaaacaattcctt |
211 |
Q |
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| T |
26596306 |
ccttttcttcttcattttaaaaatcat-------ctctttggatagatggatggaaagccaccaagaagcagtattttttt-ctctctaaacaattcctt |
26596397 |
T |
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| Q |
212 |
tgagttttggatttttatacttactaaattgatcacacgttctgattctgcagagtcttttcaaacacacttgtttcaagtgcttatacttaagacattg |
311 |
Q |
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| T |
26596398 |
tgagttttggatttttatacttactaaattgatcacacgttctgattctgcagagtcttttcaaacacacttgtttcaagtgcttatacttaagacattg |
26596497 |
T |
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| Q |
312 |
atgttacacttatgagttggtttgt |
336 |
Q |
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| T |
26596498 |
atgttacacttatgagttggtttgt |
26596522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 26611529 - 26611629
Alignment:
| Q |
236 |
taaattgatcacacgttctgattctgcagagtcttttcaaacacacttgtttcaagtgcttatacttaagacattgatgttacacttatgagttggtttg |
335 |
Q |
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| T |
26611529 |
taaatagatcacacgttctgattctgcagagtcttttcaaacacatttgtttcaagtgctcatacttgcgacattgatgttacacttatgagttgttttg |
26611628 |
T |
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| Q |
336 |
t |
336 |
Q |
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| T |
26611629 |
t |
26611629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 26596165 - 26596245
Alignment:
| Q |
13 |
aatattagggtatgtcaaagacatcaagannnnnnnaaaattttaattatatgatctttttgttaaaaaatgaatccatta |
93 |
Q |
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| T |
26596165 |
aatattagggtatgtcaaagacatcaagattttttaaaatttttaattatatgatctttttgttaaaaaatgaatccatta |
26596245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 26604026 - 26604097
Alignment:
| Q |
259 |
ctgcagagtcttttcaaacacacttgtttcaagtgcttatacttaagacattgatgttacacttatgagttg |
330 |
Q |
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| T |
26604026 |
ctgcagagtcttttgaaacacacttgtttcaagtgctcatacttgtgacattgatgttacacttatgagttg |
26604097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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