View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3140_low_34 (Length: 347)
Name: NF3140_low_34
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 1048008 - 1047823
Alignment:
| Q |
21 |
catgtgaccttcgtaattannnnnnnacagtgaaatatctttgtaataattccttggtaataaatattttgtttgtcaagcagtctacgtctaataggta |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| | |
|
|
| T |
1048008 |
catgtgaccttcgtaattatttttttacagtgaaatatctttgtaat---tccttggtaataaatattttgtttgtcaagtagtcta------ataggca |
1047918 |
T |
|
| Q |
121 |
ggtgaataagtgagaaattcgaggttcgaacttctagtatattgcaaaattgtattttccttctatatttgtgagtgtcatggccgtcgaaaatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1047917 |
ggtgaataagtgagaaattcgaggttcgaacttctagtatattgcaaaattgtattttccttctatatttgtgagtgtcatggccgtcggaaatt |
1047823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 1073730 - 1073624
Alignment:
| Q |
109 |
gtctaataggtaggtgaataagtgagaaattcgaggttcgaacttctagtatattgcaaaattgtattttccttctatatttgtgagtgtcatggccgtc |
208 |
Q |
| |
|
||||||||||||| | ||| ||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1073730 |
gtctaataggtagatatatatgtgaggaatttcaggttcaaacttctaatatattgcaaaattgtattttccttctatatttgtgagtgtcatggctgtc |
1073631 |
T |
|
| Q |
209 |
gaaaatt |
215 |
Q |
| |
|
||||||| |
|
|
| T |
1073630 |
gaaaatt |
1073624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 1047828 - 1047754
Alignment:
| Q |
238 |
gaaatttaaagttggccatcggaaaaagaagcctaa--ctatgatgcctcttctagtgtcatttatataatccat |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1047828 |
gaaatttcaagttggccatcggaaaaagaagtctaatactatggtgcctcttcaagtgtcatttatataatccat |
1047754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 1088693 - 1088567
Alignment:
| Q |
47 |
acagtgaaatatctttgtaataattccttggtaataaatattttgtttgtcaagcagtctacgtctaataggtaggtgaataagtgagaaattcgaggtt |
146 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||| ||||||||||||||||| |||||| |||||||| | ||||| |||| |||| |||||| |
|
|
| T |
1088693 |
acagtgaaatatctt---attaatttcttggtaatatatattttgtttgtcaagtagtcta------ataggtagataaataaatgaggaatttgaggtt |
1088603 |
T |
|
| Q |
147 |
cgaacttctagtatattgcaaaattgtattttcctt |
182 |
Q |
| |
|
|||||||| || |||||||||| ||||||| |||| |
|
|
| T |
1088602 |
cgaacttccagaatattgcaaagatgtatttccctt |
1088567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 1073621 - 1073569
Alignment:
| Q |
247 |
agttggccatcggaaaaagaagcctaactatgatgcctcttctagtgtcattt |
299 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
1073621 |
agttggccatcgggaaaagaaatctaactatggtgcctcttctagtgtcattt |
1073569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 3218670 - 3218638
Alignment:
| Q |
119 |
taggtgaataagtgagaaattcgaggttcgaac |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
3218670 |
taggtgaataagtgagaagttcgaggttcgaac |
3218638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University