View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3140_low_35 (Length: 346)

Name: NF3140_low_35
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3140_low_35
NF3140_low_35
[»] chr2 (6 HSPs)
chr2 (50-328)||(36338737-36339032)
chr2 (131-246)||(27648486-27648601)
chr2 (1-49)||(36339130-36339175)
chr2 (92-132)||(44686164-44686204)
chr2 (55-89)||(27648394-27648428)
chr2 (55-89)||(44686218-44686252)
[»] chr6 (2 HSPs)
chr6 (104-246)||(353107-353256)
chr6 (150-238)||(14351387-14351473)
[»] chr3 (3 HSPs)
chr3 (98-246)||(53837413-53837568)
chr3 (129-246)||(53833815-53833932)
chr3 (54-89)||(24734349-24734384)
[»] chr1 (1 HSPs)
chr1 (129-246)||(47833942-47834059)
[»] chr5 (4 HSPs)
chr5 (128-261)||(33827629-33827762)
chr5 (181-246)||(23755639-23755704)
chr5 (181-246)||(23821095-23821160)
chr5 (181-246)||(23687654-23687719)
[»] chr4 (1 HSPs)
chr4 (128-183)||(54572992-54573047)
[»] chr7 (3 HSPs)
chr7 (54-89)||(4648283-4648318)
chr7 (169-263)||(17001734-17001826)
chr7 (54-86)||(38787113-38787145)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 50 - 328
Target Start/End: Complemental strand, 36339032 - 36338737
Alignment:
Q  50 gaactgactgttgtatcctggagagtactagctatgaga-------ca----gtaacctatccgaggtggcgaaatactcttaagcccg------gtgca 132  Q
    |||||||||||||||||||||||||||||||| | ||||       ||    ||||||||| |||| ||||||||||||||||| || |      |||||    
T  36339032 gaactgactgttgtatcctggagagtactagccacgagatctactgcatcgggtaacctattcgagatggcgaaatactcttaaaccagtgcttcgtgca 36338933  T
Q  133 cgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattaccttat 232  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  36338932 cgcctcagtcaatattcgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgctgtctattaccttat 36338833  T
Q  233 aataattctatgtcgtatttttccaacaatttattccttgaggaatctcgttgaattcagttcttatcaagattgattctagtgaacatgcattat 328  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36338832 aataattctatgtggtatttttccaacaatttatttcttgaggaatctcgttgaattcagttcttatcaagattgattctagtgaacatgcattat 36338737  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 27648486 - 27648601
Alignment:
Q  131 cacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattacctt 230  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||  ||||||||||    
T  27648486 cacgcctcaatcaataatcgataagtttacttgttctctattctattatatttagagctctattaatttgatgctaatatttcttgttacttattacctt 27648585  T
Q  231 ataataattctatgtc 246  Q
    ||||||||| ||||||    
T  27648586 ataataattatatgtc 27648601  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36339175 - 36339130
Alignment:
Q  1 aagttacattgagagagaacaaacttgttagatgctttcatctcttctt 49  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||    
T  36339175 aagttacattgagagagaaca---ttgttagatgctttcatctcttctt 36339130  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 44686204 - 44686164
Alignment:
Q  92 taacctatccgaggtggcgaaatactcttaagcccggtgca 132  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  44686204 taacttatccgaggtggcgaaatactcttaagcccagtgca 44686164  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 27648394 - 27648428
Alignment:
Q  55 gactgttgtatcctggagagtactagctatgagac 89  Q
    |||||||||||||||||||||| ||||||||||||    
T  27648394 gactgttgtatcctggagagtattagctatgagac 27648428  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 44686252 - 44686218
Alignment:
Q  55 gactgttgtatcctggagagtactagctatgagac 89  Q
    |||||||||||||||||||||| ||||||||||||    
T  44686252 gactgttgtatcctggagagtattagctatgagac 44686218  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 353107 - 353256
Alignment:
Q  104 ggtggcgaaatactcttaagcccggtgc-------acgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaa 196  Q
    ||||||||||||||||||||||| ||||       |||||||| |||||| | ||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  353107 ggtggcgaaatactcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctattctattgtatttagaattctattaa 353206  T
Q  197 tttgatgctaataattcttgttgtttattaccttataataattctatgtc 246  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  353207 tttgatgctaatatttcttgttgtttattaccttataataattctatgtc 353256  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 14351387 - 14351473
Alignment:
Q  150 gataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattaccttataataat 238  Q
    ||||||||||  ||||||||| ||||||| ||||||| || |||||| | ||| |||||| ||||||||||| ||||| ||||||||||    
T  14351387 gataagtttatttattctctactctattgcatttagatttgtattaaat-gatactaata-ttcttgttgttaattactttataataat 14351473  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 53837568 - 53837413
Alignment:
Q  98 atccgaggtggcgaaatactcttaagcccggt-------gcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttc 190  Q
    |||||||||||||||||||||||||||||  |       |||||||||| |||||| | ||||||||||| | |||||||||||||| | ||||||||||    
T  53837568 atccgaggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttacttgttctctattctattatgtttagagttc 53837469  T
Q  191 tattaatttgatgctaataattcttgttgtttattaccttataataattctatgtc 246  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  53837468 tattaatttgatgctaatatttcttattgcttattaccttataataattttatgtc 53837413  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 53833932 - 53833815
Alignment:
Q  129 tgcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattacc 228  Q
    |||||||||||| ||||| | ||||||||||  | ||||||||| |||| ||||||||||||||||||||||||| ||||| ||||| ||| ||||||||    
T  53833932 tgcacgcctcaaccaataatcgataagtttagttgttctctattatattatatttagagttctattaatttgatgttaatatttcttattgcttattacc 53833833  T
Q  229 ttataataattctatgtc 246  Q
    ||||||||||||||||||    
T  53833832 ttataataattctatgtc 53833815  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 24734384 - 24734349
Alignment:
Q  54 tgactgttgtatcctggagagtactagctatgagac 89  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24734384 tgactgttgtatcctggagagtattagctatgagac 24734349  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 47833942 - 47834059
Alignment:
Q  129 tgcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattacc 228  Q
    |||| |||||| |||||| | ||||||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||  ||||||||    
T  47833942 tgcatgcctcagtcaataatcgataagtttacttgttctctattctattatatttagagatctattaatttgatgctaatatttctcgttacttattacc 47834041  T
Q  229 ttataataattctatgtc 246  Q
    ||||||||||||||||||    
T  47834042 ttataataattctatgtc 47834059  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 261
Target Start/End: Original strand, 33827629 - 33827762
Alignment:
Q  128 gtgcacgcctcaatcaatatttgataagtttacatattctctattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattac 227  Q
    |||||||||||| |||||    ||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||  |||||||    
T  33827629 gtgcacgcctcagtcaatgaccgataaatttacttgttctctattctattatatttagagttctattaatttgatgctaatatttcttattacttattac 33827728  T
Q  228 cttataataattctatgtcgtatttttccaacaa 261  Q
    ||||||||| |||| ||||  |||||||| ||||    
T  33827729 cttataatatttctctgtctaatttttcctacaa 33827762  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 23755704 - 23755639
Alignment:
Q  181 tttagagttctattaatttgatgctaataattcttgttgtttattaccttataataattctatgtc 246  Q
    ||||||||| |||||||||||| || |||||||||||||||||| || || |||||||||||||||    
T  23755704 tttagagttgtattaatttgatactgataattcttgttgtttatcactttttaataattctatgtc 23755639  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 23821160 - 23821095
Alignment:
Q  181 tttagagttctattaatttgatgctaataattcttgttgtttattaccttataataattctatgtc 246  Q
    ||||||||| |||||||||||| || |||||||||||||||||| || || |||||||||||||||    
T  23821160 tttagagttgtattaatttgatactgataattcttgttgtttatcactttttaataattctatgtc 23821095  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 23687719 - 23687654
Alignment:
Q  181 tttagagttctattaatttgatgctaataattcttgttgtttattaccttataataattctatgtc 246  Q
    ||||||||| |||||||||||| || ||| ||||| |||||||| || || |||||||||||||||    
T  23687719 tttagagttgtattaatttgatactgatatttcttattgtttatcactttgtaataattctatgtc 23687654  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 54572992 - 54573047
Alignment:
Q  128 gtgcacgcctcaatcaatatttgataagtttacatattctctattctattgtattt 183  Q
    |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||    
T  54572992 gtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 54573047  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 4648318 - 4648283
Alignment:
Q  54 tgactgttgtatcctggagagtactagctatgagac 89  Q
    |||||||||||||||| |||||||||||||||||||    
T  4648318 tgactgttgtatcctgaagagtactagctatgagac 4648283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 17001826 - 17001734
Alignment:
Q  169 tattctattgtatttagagttctattaatttgatgctaataattcttgttgtttattaccttataataattctatgtcgtatttttccaacaatt 263  Q
    |||| |||| |||||||| || ||||||||||||  | ||| ||||||||||||||||| | ||||||||  ||||||  |||||| ||||||||    
T  17001826 tattttattttatttagatttgtattaatttgataatgatatttcttgttgtttattacttcataataat--tatgtctaattttttcaacaatt 17001734  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 38787113 - 38787145
Alignment:
Q  54 tgactgttgtatcctggagagtactagctatga 86  Q
    |||||||||||||||||||||||||| ||||||    
T  38787113 tgactgttgtatcctggagagtactaactatga 38787145  T

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