View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_39 (Length: 319)
Name: NF3140_low_39
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 36519891 - 36520179
Alignment:
| Q |
19 |
aacattgtattgttgttgttatcattttggttaagtgccatgttttattgaacaattgaaaggaaagtgacggacaaagaagnnnnnnnnnnattgaaca |
118 |
Q |
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| T |
36519891 |
aacattgtattgttgttgttatcattttggttaagtgccatgttttattgaacaattgaaaggaaagtgacggacaaagaagttttttttttattgaaca |
36519990 |
T |
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| Q |
119 |
aatattatcgtgaactaccaaagatgataggtatattaaattaattgatatgaatttccaatattgaccttataatattgatacctacaaatatgtaaat |
218 |
Q |
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| T |
36519991 |
aatattatcgtgaactaccaaagatgataggtatattaaattaattgatatgaatttccaatattgaccttataatattgatacctac---tatgtaaat |
36520087 |
T |
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| Q |
219 |
aaattattaaaagtattactataaaacatattacctcatacaataggtaagaaatagcacaacaacatgctaaaacacgtaaagttatccct |
310 |
Q |
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| T |
36520088 |
aaattattaaaagtattactataaaacatattacctcatacaataggtaagaaatagcacaacaacatgctaaaacacgtaaagttatccct |
36520179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 36801075 - 36801009
Alignment:
| Q |
31 |
ttgttgttatcattttggttaagtgccatgttttattgaacaattgaaaggaaagtgacggacaaag |
97 |
Q |
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| T |
36801075 |
ttgttattatcattttggttaagtttcatgttttattgaacaattgaaaggaaagtgacggacaaag |
36801009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 38629008 - 38629182
Alignment:
| Q |
115 |
aacaaatattatcgtgaactaccaaagatgataggtatattaaattaattgatatgaatttccaatattgaccttataatattgatacctacaaatatgt |
214 |
Q |
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| T |
38629008 |
aacaaatattatagtaaactatcaaagaggatagggatattaaattaattaatttgaatttccgatattgatcatataatattgatacctacaaatatgt |
38629107 |
T |
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| Q |
215 |
aaataaattattaaaagtattactataaaacatattacctcatacaataggtaagaaatagcacaacaacatgcta |
290 |
Q |
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| T |
38629108 |
aaataaattattaaaagtattactataaaacatattacctcctacaatagg-cggaaatagtacaacaacttgcta |
38629182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 25377324 - 25377279
Alignment:
| Q |
183 |
tgaccttataatattgatacctacaaatatgtaaataaattattaa |
228 |
Q |
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| T |
25377324 |
tgaccttgtaatattgataccaacaaatatgtgaataaatcattaa |
25377279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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