View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_40 (Length: 316)
Name: NF3140_low_40
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 27981199 - 27981309
Alignment:
| Q |
1 |
ttttcccatttccattccaaatttctacaatctcatctctattttcacgtccctaaatgtttttaactgttaagcttcacaaattcaaaaccaactattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27981199 |
ttttcccatttccattccaaatttctacaatctcatctctattttcacgtccctaaatgtttttaactgttaagcttcacaaattcaaaaccaacttttt |
27981298 |
T |
|
| Q |
101 |
atcaatcacca |
111 |
Q |
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||||||||||| |
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| T |
27981299 |
atcaatcacca |
27981309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28067729 - 28067839
Alignment:
| Q |
1 |
ttttcccatttccattccaaatttctacaatctcatctctattttcacgtccctaaatgtttttaactgttaagcttcacaaattcaaaaccaactattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28067729 |
ttttcccatttccattccaaatttctacaatctcatctctattttcacgtccctaaatgtttttaactgttaagcttcacaaattcaaaaccaacttttt |
28067828 |
T |
|
| Q |
101 |
atcaatcacca |
111 |
Q |
| |
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||||||||||| |
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| T |
28067829 |
atcaatcacca |
28067839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 27981380 - 27981503
Alignment:
| Q |
182 |
acttgattagggtttgaatcaacttgctttctaggttcatgcttcatgtaaacattcatttcagtaatgtgcagtgtgctattaacaaaatggagttgag |
281 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
27981380 |
acttgattagggtttgaatcaacttactttctaggttcatgcttcatgtaaacattcatttcagtaatgtacagtgtgctattaacaaaatggacttgag |
27981479 |
T |
|
| Q |
282 |
cttataatagtagcctatagtata |
305 |
Q |
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|||||||||||| |||||| |||| |
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| T |
27981480 |
cttataatagtatcctatactata |
27981503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 28067910 - 28068033
Alignment:
| Q |
182 |
acttgattagggtttgaatcaacttgctttctaggttcatgcttcatgtaaacattcatttcagtaatgtgcagtgtgctattaacaaaatggagttgag |
281 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
28067910 |
acttgattagggtttgaatcaacttactttctaggttcatgcttcatgtaaacattcatttcagtaatgtacagtgtgctattaacaaaatggacttgag |
28068009 |
T |
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| Q |
282 |
cttataatagtagcctatagtata |
305 |
Q |
| |
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|||||||||||| |||||| |||| |
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| T |
28068010 |
cttataatagtatcctatactata |
28068033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 26421016 - 26420956
Alignment:
| Q |
182 |
acttgattagggtttgaatcaacttgctttctaggttcatgcttcatgtaaacattcattt |
242 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
26421016 |
acttaattagggtttgaatcaacttgctatctaggttcatgcttcatgtaaacattgattt |
26420956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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