View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_44 (Length: 299)
Name: NF3140_low_44
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 20472427 - 20472156
Alignment:
| Q |
14 |
agacgatttatttaaagtattagataaacgataccatgcctcatatcataggnnnnnnnggacatataaatattaagcagtgataggcatcttcaagaat |
113 |
Q |
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| T |
20472427 |
agacgatttatttaaagtattagataaacgataccatgcctcatatcataggtttttttggacatataaatattaagcagtgataggcatcttcaagaat |
20472328 |
T |
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| Q |
114 |
tcttttgtgaacttatacttggaggcaatcttgaagtattcttccgcctcagagctagaagcaaaacaccagccatattcattatcagaattaggataac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20472327 |
tcttttgtgaacttatacttggaggcaatcttgaagtattcttccgcctcagagctagaagcaaaacaccagccatattcattatcagaattaggataac |
20472228 |
T |
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| Q |
214 |
gcgcacaaaaggtcccaattcctctttctgtgcaatctgtatgagactgacaaaatttttgatgttcctctt |
285 |
Q |
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| T |
20472227 |
gcgcacaaaaggtcccaattcctctttctgtgcaatctgtatgagactgacaaaatttttgatgttcctctt |
20472156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 20460554 - 20460398
Alignment:
| Q |
79 |
ataaatattaagcagtgataggcatcttcaagaattcttttgtgaacttatacttggaggcaatcttgaagtattcttccgcctcagagctagaagcaaa |
178 |
Q |
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| T |
20460554 |
ataaatattatgcggtgataggcaacttcaagaattcttttgtgaacttatactttgaggcaatcttgaagtattcttccgcctcggagtaagacgcaaa |
20460455 |
T |
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| Q |
179 |
acaccagccatattcattatcagaattaggataacgcgcacaaaaggtcccaattcc |
235 |
Q |
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| T |
20460454 |
acaccagccaaattgattatcaggatcaagataacgagcgcagaagcttccaattcc |
20460398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 15129286 - 15129330
Alignment:
| Q |
176 |
aaaacaccagccatattcattatcagaattaggataacgcgcaca |
220 |
Q |
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| T |
15129286 |
aaaacaccagccatgttcgatatcagaattaggataacgagcaca |
15129330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 12837476 - 12837625
Alignment:
| Q |
86 |
ttaagcagtgataggcatcttcaagaattcttttgtgaacttatacttggaggcaatcttgaagtattcttccgcctcagagctagaagcaaaacaccag |
185 |
Q |
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| T |
12837476 |
ttaagcagtgataggcattttaaggaagtctcttttgaatttatacttggcggtaaacttgaagtactcttgtgcctcagagaaagatgcaaaacaccag |
12837575 |
T |
|
| Q |
186 |
ccatattcattatcagaattaggataacgcgcacaaaaggtcccaattcc |
235 |
Q |
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| T |
12837576 |
ccatttttgttatcagaattaggagaacgagcgcaaaagctcccacttcc |
12837625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 261
Target Start/End: Original strand, 30635797 - 30635931
Alignment:
| Q |
128 |
atacttggaggcaatcttgaagtattcttccgcctcagagctagaagcaaaacaccagccatattcattatcagaattaggataacgcgcacaaaaggtc |
227 |
Q |
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| T |
30635797 |
atactgggaggcaatcttgaagatgtgttccgcctcagagatcgatgcaaaacaccaaccatgttcgttatcaaaattagaataacgagcgcaaaagctc |
30635896 |
T |
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| Q |
228 |
ccaattcc-tctttctgtgcaatctgtatgagact |
261 |
Q |
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| T |
30635897 |
ccaattccttttttttgtgcaatccatatgagact |
30635931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 6802982 - 6803101
Alignment:
| Q |
164 |
agagctagaagcaaaacaccagccatattcattatcagaattaggataacgcgcacaaaaggtcccaattcctctttctgtgcaatctgtatgagactga |
263 |
Q |
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|||| |||| ||||||||||| |||||||| ||||| |||||||||||| || ||||| ||||| ||||| | | |||||||| | |||||||||| |
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| T |
6802982 |
agagttagaggcaaaacaccatccatattcgatatcaagattaggataacgagcgcaaaaactcccacttcctttcttcgtgcaatcagcatgagactga |
6803081 |
T |
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| Q |
264 |
caaaatttttgatgttcctc |
283 |
Q |
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| T |
6803082 |
cataagttaggatgttcctc |
6803101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 25481936 - 25481745
Alignment:
| Q |
77 |
atataaatattaagcagtgataggcatcttcaagaattcttttgtgaacttatacttggaggcaatcttgaagtat---tcttccgcctcagagctagaa |
173 |
Q |
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|||| |||||||| |||| |||||| |||||||||| ||||||| ||| ||| | || ||||||||||||||| || ||||| || ||||| ||| |
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| T |
25481936 |
atatcaatattaaacagtaataggcctcttcaagaagtcttttgagaatttagatttagaggcaatcttgaagaatatgtcttctgcttcagactcagag |
25481837 |
T |
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| Q |
174 |
gcaaaacaccagccatattcattatcagaattaggataacgcgcacaaaaggtcccaattcctctttctgtgcaatctgtatgagactgaca |
265 |
Q |
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| T |
25481836 |
gcaaaacaccagccatattccaaaatagaatttggataacgtccacaaaaactcccactacctttctttgtgcaatcagtatgagactgaca |
25481745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 30056012 - 30056073
Alignment:
| Q |
162 |
tcagagctagaagcaaaacaccagccatattcattatcagaattaggataacgcgcacaaaa |
223 |
Q |
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|||||| |||| ||||||||||||||||||| |||||||||||| | |||| |||||||| |
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| T |
30056012 |
tcagagatagaggcaaaacaccagccatatttgatatcagaattagcaaaacgagcacaaaa |
30056073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 7941621 - 7941532
Alignment:
| Q |
176 |
aaaacaccagccatattcattatcagaattaggataacgcgcacaaaaggtcccaattcctctttctgtgcaatctgtatgagactgaca |
265 |
Q |
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||||||||| |||||||| |||||| |||||||||||| ||||||||| | ||| ||||| | | |||||||| | |||||| ||||| |
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| T |
7941621 |
aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgaca |
7941532 |
T |
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