View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_47 (Length: 290)
Name: NF3140_low_47
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 24888080 - 24888338
Alignment:
| Q |
15 |
atttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcagtcatacgctataagtt |
114 |
Q |
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| T |
24888080 |
atttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcacctatcaactataacctagtttatcagtcatacgctataagtt |
24888179 |
T |
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| Q |
115 |
catccgctatttgtttgccaaagagagccatgatgttagtatgaaagttgatgttttatttacaggtcctgcacctcggctgccttatgttttaccaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24888180 |
catccgctatttgtttgccaaagagagccatgatgttagtatgaaagttgatgttttatttacaggtcctgcacctcggctgccttatgttttaccaaac |
24888279 |
T |
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| Q |
215 |
tctgatagtcgtcctgttcctgccgatttccctccagaagatgcagaccttctcacaca |
273 |
Q |
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| T |
24888280 |
tctgatagtcgtcctgttcctgccgatttccctccagaagatgcagacctcctcacaca |
24888338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 43822713 - 43822800
Alignment:
| Q |
33 |
ttttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcagtcatacgctataagttcatccg |
120 |
Q |
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| T |
43822713 |
ttttaccaaacacttcaaattcaattagctagtttatccgctatcagctataagctagcttatcagtcatccgctataagctcatccg |
43822800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 18084908 - 18084842
Alignment:
| Q |
32 |
attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag |
98 |
Q |
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| T |
18084908 |
attttaccaaacactgcaaattcaatcagctaacttatccgctatcatctataagctagtttatcag |
18084842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 30802465 - 30802531
Alignment:
| Q |
32 |
attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag |
98 |
Q |
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|||||| ||||||||||||| | ||| |||||| || ||| |||||| |||||| |||||||||||| |
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| T |
30802465 |
attttaccaaacactacaaattcaataagctaacttatccgctatcatctataagctagtttatcag |
30802531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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