View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_48 (Length: 277)
Name: NF3140_low_48
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 15570995 - 15571266
Alignment:
| Q |
1 |
aagaaacacaaaccttcttgcaagtgttcttcctcttttctctatactacaatattactcttatttgctcaactctcctatctagtttcttcacaaataa |
100 |
Q |
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| T |
15570995 |
aagaaacacaaaccttcttgcaagtgttcttcctcttttctctatactacaatattactctaatttgctcaactctcctatctagtttcttcacaaataa |
15571094 |
T |
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| Q |
101 |
ataaagaaaaatggctatggaaaaatcaaattcctttgagaacatgaaacattacactgctatgatatgtttacaatttggctatgctggtatgaacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15571095 |
ataaagaaaaatggctatggaaaaatcaaattcctttgagaacatgaaacattacactgctatgatatgtttacaatttggctatgctggtatgaacatt |
15571194 |
T |
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| Q |
201 |
atcactaaggtttccctcaaccaaggaatgagccactatgtcctcgtcgtttatcgccacgcctttgctact |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15571195 |
atcactaaggtttccctcaaccaaggaatgagccactatgtcctcgtcgtttatcgccacgcttttgctact |
15571266 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 3434964 - 3434866
Alignment:
| Q |
170 |
tttacaatttggctatgctggtatgaacattatcactaaggtttccctcaaccaaggaatgagccactatgtcctcgtcgtttatcgccacgcctttgc |
268 |
Q |
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|||||| ||||||||||| || |||||||| || || ||| |||| ||||| ||| ||||| |||||||||||||| ||||||||||| || ||||| |
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| T |
3434964 |
tttacagtttggctatgcaggcatgaacatcataaccaagctttctctcaatggagggatgagtcactatgtcctcgttgtttatcgccatgcttttgc |
3434866 |
T |
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