View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_5 (Length: 621)
Name: NF3140_low_5
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_5 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 223 - 621
Target Start/End: Original strand, 26436364 - 26436763
Alignment:
| Q |
223 |
agagatgaaatgtatatttggtttggtgtttcctccacattgatgtttgtcaatctgggttttcgatatgaagggacgtgggcacgatacactgttaggt |
322 |
Q |
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| T |
26436364 |
agagatgaaaagtatatttggtttggtgtttactccatattgatgtttgtcaatctgggttttcgatatgaagggacgtgggcacgatgcactgttaggt |
26436463 |
T |
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| Q |
323 |
gttgtaccatctgttttgaattcctaattcccaactctagtgtaggaatgtggtagaagagatctgtacacattttaggcttgttcttctgggagaattg |
422 |
Q |
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| T |
26436464 |
gttgtaccatctgttttgaattcctaattcccaactctagtgtaggaatgtggtagaagagatctgtacacattttaggcttgttcttccgggagaattg |
26436563 |
T |
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| Q |
423 |
gctaaacatgttgattccgagggcaccaaagctgttagtattaagtttacaagttcttagatttggggatcttgttaaaaagttgctatctctcatctct |
522 |
Q |
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| T |
26436564 |
gcgaaacatgttgattccgagggcacgaaagctgttagtattaagtttacaagttcttagatttggggatcttgttaaaaagttgctatctctcatctct |
26436663 |
T |
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| Q |
523 |
gtttaagatccacta-nnnnnnnnnattgaattgtaatgaactaatgggatcttgttgatccttctgttgaagaaaatggtagaattaataatattagat |
621 |
Q |
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| T |
26436664 |
gtttaagatccactattttttttttattgaactgtaatgaactaatgggatcttgttgatccttctgttgaagaaaatggtagaattaataatattagat |
26436763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 26436166 - 26436325
Alignment:
| Q |
30 |
gatttgtaatgaactgattggatcttgttgatcctttttgttaatgaaaatggtggaattaatgatcttttttgtatata---taattgtgcaagtttat |
126 |
Q |
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| T |
26436166 |
gatttgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaatgatcttttttgtatatactataattgtgcaagtttat |
26436265 |
T |
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| Q |
127 |
gttttatttgtttgggccagagtaaccaagattcaatatctttgtactatttgaatattg |
186 |
Q |
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| T |
26436266 |
gttttatttgtttgggccagagtaaccaagattcaatatctttgtactatttgaatattg |
26436325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 31632970 - 31633118
Alignment:
| Q |
34 |
tgtaatgaactgattggatcttgttgatcctttttgttaatgaaaatggtggaattaatgatcttttttgtat-atataattgtgcaagtttatgtttta |
132 |
Q |
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| T |
31632970 |
tgtattgaattgattggatcttgttgatcctttttgttaatgaaaatggtggaattaataatcctttttgtataatataattgtgctagtttatgtttta |
31633069 |
T |
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| Q |
133 |
tttgtttgggccagagtaaccaagattcaatatctttgtactatttgaa |
181 |
Q |
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| T |
31633070 |
tctgtttggaccagagtaaccaagattcaacctctttgtactatttgaa |
31633118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 24298445 - 24298506
Alignment:
| Q |
33 |
ttgtaatgaactgattggatcttgttgatcctttttgttaatgaaaatggtggaattaatga |
94 |
Q |
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| T |
24298445 |
ttgtgatgaagtaattgtatcttgttgatcctttttgtgtatgatagtggtggaattaatga |
24298506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 484
Target Start/End: Complemental strand, 34662128 - 34662044
Alignment:
| Q |
397 |
ttaggcttgttcttctgggagaattggctaaacatgttgattccgagggcaccaaagctgttagtattaagtttacaagttcttagat |
484 |
Q |
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| T |
34662128 |
ttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgt---aacgaagtttacaagttcttagat |
34662044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 26436164 - 26436228
Alignment:
| Q |
548 |
ttgaattgtaatgaactaatgggatcttgttgat-ccttctgttgaagaaaatggtagaattaat |
611 |
Q |
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| T |
26436164 |
ttgatttgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaat |
26436228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 45576522 - 45576670
Alignment:
| Q |
34 |
tgtaatgaactgattggatcttgttgatcctttttgttaatgaaaatggtggaattaatgatcttttttgtat-atataattgtgcaagtttatgtttta |
132 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||| ||||||||||||| |
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| T |
45576522 |
tgtattgaactgattggatcttgtttatcctttttgttaatgaaaatggtggaattaataatcctttttgtctaatataattgtgctagtttatgtttta |
45576621 |
T |
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| Q |
133 |
tttgtttgggccagagtaaccaagattcaatatctttgtactatttgaa |
181 |
Q |
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| T |
45576622 |
tctgtttggaccagagtaaccaagattcaacctctttgtactatttgaa |
45576670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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