View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_52 (Length: 256)
Name: NF3140_low_52
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18194435 - 18194198
Alignment:
| Q |
1 |
taaaacaaatcattggatttcagtcaaaaaatctcctttcctttgttatttatcgtgtgattcgtgtctcatttacagaatatgtacaacaaagatattt |
100 |
Q |
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| T |
18194435 |
taaaacaaatcattggatttcagtcaaaaaatctcctttcctttgttatttatcgtgtgattcgtgtctcatttacagaatatgtacaacaaagatattt |
18194336 |
T |
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| Q |
101 |
actaaacaaagtcatctggttctagaaagagaagaaaagcttagcagaaatcaactatattagcctatgatctatttcagaaacactttgaaatctgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18194335 |
actaaacaaagtcatctggttctagaaagagaagaaaagcttagcagaaatcaactatattagcctatgatctatttcagaaacactttgaaatctgatc |
18194236 |
T |
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| Q |
201 |
agtctttctcactataatttaccgttgacacagacacg |
238 |
Q |
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| T |
18194235 |
agtctttctcactataatttaccgttgacacagacacg |
18194198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 18189210 - 18188958
Alignment:
| Q |
1 |
taaaacaaatcattggatttcagtcaaaaaatctcctttcctttgt-tatttatcgtgtgatt---cgtgtctcatttacagaatatgtacaacaaagat |
96 |
Q |
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| T |
18189210 |
taaaaaaaaacattggatttcagtccaaaaatctcctttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagat |
18189111 |
T |
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| Q |
97 |
atttactaaacaaagtcatctggttc----taga-aagagaagaaaagc-------ttagcagaaatcaactatattagcctatgatctatttcagaaac |
184 |
Q |
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| T |
18189110 |
atttactcaacaaagtcatctgattcagaataaagaagaaaagaaaagaatcttagttagcagaaagcaactatactagcgtatgatctatttcagaaac |
18189011 |
T |
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| Q |
185 |
actttgaaatctgatcagtctttctcactataatttaccgttgacacagacac |
237 |
Q |
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| T |
18189010 |
attttgaaatctgaccagtctatctcactataatttacctatggcacagacac |
18188958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 18198977 - 18198925
Alignment:
| Q |
65 |
tgtctcatttacagaatatgtacaacaaagatatttactaaacaaagtcatct |
117 |
Q |
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| T |
18198977 |
tgtctcatttacataatatgtgcatcaaagatatttactcaacaaagttatct |
18198925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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