View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_53 (Length: 254)
Name: NF3140_low_53
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_53 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 24564896 - 24565131
Alignment:
| Q |
19 |
taagaaacttggccccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24564896 |
taagaaacttggccccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactgattgatga |
24564995 |
T |
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| Q |
119 |
aaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564996 |
aaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatt |
24565095 |
T |
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| Q |
219 |
tgaatgacaaaaattcacatcaaaggtccgcatcct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24565096 |
tgaatgacaaaaattcacatcaaaggtccgcatcct |
24565131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 14164926 - 14165020
Alignment:
| Q |
118 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggat |
212 |
Q |
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||||||||||||||||||| | | |||||||||||||||||| ||||||||| ||||| ||| ||||| |||||||| ||||||| | ||||||| |
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| T |
14164926 |
aaaaatgtggccttgatgctcaactcctttcctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
14165020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 45533156 - 45532939
Alignment:
| Q |
21 |
agaaacttggccccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaa |
120 |
Q |
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|||||||||||||| || |||||||||||| ||||||||| ||||| |||| |||||||||||||| ||||||||| ||||||||| |
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| T |
45533156 |
agaaacttggcccct-accgcaccgactactttgtgacttcttcactaccaccgacaccgaaatgtcaccatttctccatcgaaaaa------------- |
45533071 |
T |
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| Q |
121 |
aatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatttg |
220 |
Q |
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|||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |
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| T |
45533070 |
--tgtggccttgatgccccactcctttcctatttcttgatcttttctctatctctacaaaaccaaatgtaataaagatcatttggtaaggatgaaatttg |
45532973 |
T |
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| Q |
221 |
aatgacaaaaattcacatcaaaggtccgcatcct |
254 |
Q |
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| T |
45532972 |
aatgacaaaaattcagatcaaaggttcacatcct |
45532939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 44339036 - 44339252
Alignment:
| Q |
32 |
cccccactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggcctt |
131 |
Q |
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||||||||||| |||||||| ||||||||| ||| ||||| ||||||||||| | ||||||||| | ||| | | ||||||||||||||||||| |
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| T |
44339036 |
cccccactgcatcgactactttgtgacttcttcaaagccac------cgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggcctt |
44339129 |
T |
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| Q |
132 |
gatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaa |
231 |
Q |
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||| | | |||||||||||||||||||||||||||| ||||||||| ||||| ||||| | |||||||| ||||||||||||||| |||||| ||||| |
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| T |
44339130 |
gattctcccctcctttcctatttcttcatcttttctctgtctctacaaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaa |
44339229 |
T |
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| Q |
232 |
ttcacatcaaaggtccgcatcct |
254 |
Q |
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| | ||||||||||| |||||| |
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| T |
44339230 |
tcgaaatcaaaggtccacatcct |
44339252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 77 - 254
Target Start/End: Complemental strand, 44335899 - 44335722
Alignment:
| Q |
77 |
accgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctcta |
176 |
Q |
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||||||||||||| | ||||||||| | ||| | | |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |
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| T |
44335899 |
accgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggccttgatgctcccctcctttcctatttcttcatcttttctccgtctcta |
44335800 |
T |
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| Q |
177 |
caataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatcct |
254 |
Q |
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||| ||||| ||||| | |||||||| ||||||||||||||| |||||| |||||| | ||||||||||| |||||| |
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| T |
44335799 |
caaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaatcaaaatcaaaggtccacatcct |
44335722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 29633485 - 29633314
Alignment:
| Q |
76 |
caccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctct |
175 |
Q |
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|||| |||| || ||||||| |||||| |||||||| | ||||||| |||| ||||| ||||| || ||||||||||||| || |||||| | |||| |
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| T |
29633485 |
caccaaaatatccccatttccctatcgcaaaactggcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctct |
29633386 |
T |
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| Q |
176 |
acaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtcc |
247 |
Q |
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||| ||||| |||||||| ||||||| | |||| || |||| |||||| |||||| || || |||||||| |
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| T |
29633385 |
tcaagaccaagtgtaataacgatcacttgctaagaatagaattggaatgataaaaatccagattaaaggtcc |
29633314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 232
Target Start/End: Complemental strand, 40389416 - 40389260
Alignment:
| Q |
76 |
caccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctct |
175 |
Q |
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|||| ||||||| ||||||| ||||| |||||||| | ||||||| |||| ||||| ||||| || ||||||||||||| || |||||| | |||| |
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| T |
40389416 |
caccaaaatgtccccatttccatatcgcaaaactggcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctct |
40389317 |
T |
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| Q |
176 |
acaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaat |
232 |
Q |
| |
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||| | ||| |||||||| ||||||| | |||| || |||| |||||| |||||| |
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| T |
40389316 |
tcaagatcaagtgtaataacgatcacttgctaagaatagaattggaatgataaaaat |
40389260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 16351 - 16257
Alignment:
| Q |
118 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggat |
212 |
Q |
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||||||||||||||||||| | | |||||| ||||||||||| ||||||||| ||||| ||| ||||| |||||||| ||||||| | ||||||| |
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| T |
16351 |
aaaaatgtggccttgatgctcaactccttttctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
16257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 23096176 - 23096260
Alignment:
| Q |
118 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcact |
202 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||| |||||||| |||||| ||| ||||| |||||||| ||||||| |
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| T |
23096176 |
aaaaatgtagccttgatgccccacccctttcctatttcttcaccttttctccatctcttcaaaaccaagtgtaataatgatcact |
23096260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 24867465 - 24867524
Alignment:
| Q |
142 |
tcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcac |
201 |
Q |
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||||||||||||||||| ||||||| || ||||||||| ||||| | ||||||| ||||| |
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| T |
24867465 |
tcctttcctatttcttcttcttttcactgtctctacaaaaccaagtctaataaaaatcac |
24867524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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