View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3140_low_59 (Length: 243)

Name: NF3140_low_59
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3140_low_59
NF3140_low_59
[»] chr3 (6 HSPs)
chr3 (16-243)||(6011110-6011337)
chr3 (97-243)||(6016358-6016504)
chr3 (97-243)||(6019060-6019206)
chr3 (102-221)||(6022804-6022926)
chr3 (122-242)||(5748063-5748188)
chr3 (122-242)||(5785022-5785147)
[»] scaffold0002 (1 HSPs)
scaffold0002 (122-243)||(418492-418613)
[»] chr4 (2 HSPs)
chr4 (122-243)||(18158523-18158644)
chr4 (108-243)||(40762958-40763094)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 6011337 - 6011110
Alignment:
Q  16 cacatggtacagacagaaggcaagtaacatcctctctttgctatattgtcatcagtaggtagcttttgatgaattagtctctatgcatacaaatctatgg 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011337 cacatggtacagacagaaggcaagtaacatcctctctttactaaattgtcatcagtaggtagcttttgatgaattagtctctatgcatacaaatctatgg 6011238  T
Q  116 agagttaattccatattgttcacattttctctttgtttgatctagtcaattatatatgtattctttccaatcaatctgaaataatcaaaactaaaatttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6011237 agagttaattccatattgttcacattttctctttgtttgatctagtctattatatttgtattctttccaatcaatctgaaataatcaaaactaaaatttt 6011138  T
Q  216 attcttattgtttggatatttagatttc 243  Q
    ||||||||||||||||||||||||||||    
T  6011137 attcttattgtttggatatttagatttc 6011110  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 6016504 - 6016358
Alignment:
Q  97 tatgcatacaaatctatggagagttaattccatattgttcacattttctctttgtttgatctagtcaattatatatgtattctttccaatcaatctgaaa 196  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  6016504 tatgcatacaaatctatggagtgttaattccatattgttcatattttctctttgtttgatctagtctatgatatttgtattctttccaatcaatctgaaa 6016405  T
Q  197 taatcaaaactaaaattttattcttattgtttggatatttagatttc 243  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  6016404 taatcaaaactaaaattttattcttattgtctggatatttagatttc 6016358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 6019206 - 6019060
Alignment:
Q  97 tatgcatacaaatctatggagagttaattccatattgttcacattttctctttgtttgatctagtcaattatatatgtattctttccaatcaatctgaaa 196  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  6019206 tatgcatacaaatctatggagtgttaattccatatttttcacattttctctttgtttgatctagtctattatatttgtattctttccaatcaatctgaaa 6019107  T
Q  197 taatcaaaactaaaattttattcttattgtttggatatttagatttc 243  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  6019106 taatccaaactaaaagtttattcttattgtttggatatttagatttc 6019060  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 6022926 - 6022804
Alignment:
Q  102 atacaaatctatggaga---gttaattccatattgttcacattttctctttgtttgatctagtcaattatatatgtattctttccaatcaatctgaaata 198  Q
    ||||||||||||||||    ||||||||||||||||  |||||||||||||||||||  ||||| ||||||| | ||||  || ||||||||||||||||    
T  6022926 atacaaatctatggagtagtgttaattccatattgtctacattttctctttgtttgagttagtctattatatttatatttgtttcaatcaatctgaaata 6022827  T
Q  199 atcaaaactaaaattttattctt 221  Q
    |||| ||||||||||||||||||    
T  6022826 atcacaactaaaattttattctt 6022804  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 5748063 - 5748188
Alignment:
Q  122 aattccatattgttcacattttctctttgtttgat-----ctagtcaattatatatgtattctttccaatcaatctgaaataatcaaaactaaaatttta 216  Q
    |||| |||||||| |||||||||||||||||||||     ||| || ||||||| ||| ||  |||||  |||||||||||||| ||||  |||||||||    
T  5748063 aatttcatattgtccacattttctctttgtttgatataatctaatctattatatttgtgtttgttccagacaatctgaaataatgaaaaagaaaatttta 5748162  T
Q  217 ttcttattgtttggatatttagattt 242  Q
    |||||||| |||| || |||| ||||    
T  5748163 ttcttattatttgaatttttaaattt 5748188  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 5785022 - 5785147
Alignment:
Q  122 aattccatattgttcacattttctctttgtttgat-----ctagtcaattatatatgtattctttccaatcaatctgaaataatcaaaactaaaatttta 216  Q
    |||| |||||||| |||||||||||||||||||||     ||| || ||||||| ||| ||  |||||  |||||||||||||| ||||  |||||||||    
T  5785022 aatttcatattgtccacattttctctttgtttgatataatctaatctattatatttgtgtttgttccagacaatctgaaataatgaaaaagaaaatttta 5785121  T
Q  217 ttcttattgtttggatatttagattt 242  Q
    |||||||| |||| || |||| ||||    
T  5785122 ttcttattatttgaatttttaaattt 5785147  T

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Target: scaffold0002 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 418613 - 418492
Alignment:
Q  122 aattccatattgttcacattttctctttgtttgatctagtcaattatatatgtattctttccaatcaatctgaaataatcaaaactaaaattttattctt 221  Q
    ||||||||| ||| |||||||| ||||||||||||||| || ||||||| ||||||  |||||||||||||||||||||||||| || | ||||||||||    
T  418613 aattccatagtgtccacattttttctttgtttgatctaatctattatatttgtattggttccaatcaatctgaaataatcaaaaatacatttttattctt 418514  T
Q  222 attgtttggatatttagatttc 243  Q
     || |||| || ||||||||||    
T  418513 tttatttgaatttttagatttc 418492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 18158644 - 18158523
Alignment:
Q  122 aattccatattgttcacattttctctttgtttgatctagtcaattatatatgtattctttccaatcaatctgaaataatcaaaactaaaattttattctt 221  Q
    ||||||||| ||| |||||||| ||||||||||||||| || ||||||| ||||||  |||||||||||||||||||||||||| || | ||||||||||    
T  18158644 aattccatagtgtccacattttttctttgtttgatctaatctattatatttgtattggttccaatcaatctgaaataatcaaaaatacatttttattctt 18158545  T
Q  222 attgtttggatatttagatttc 243  Q
     || |||| || ||||||||||    
T  18158544 tttatttgaatttttagatttc 18158523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 40763094 - 40762958
Alignment:
Q  108 atctatggagagttaattccatattgttcacattttctctttgtttgatctagtcaattatatatgtattctttccaatcaatctgaaataat-caaaac 206  Q
    |||||||||  || ||||||||| ||| |||||||| ||||||||||||||| || ||||||| ||||||  |||||||||||||||||||||  ||||     
T  40763094 atctatggaatgtcaattccatagtgtccacattttttctttgtttgatctaatctattatatttgtattggttccaatcaatctgaaataataaaaaaa 40762995  T
Q  207 taaaattttattcttattgtttggatatttagatttc 243  Q
    || | ||||||||||||| |||| || ||||||||||    
T  40762994 tacatttttattcttattatttgaatttttagatttc 40762958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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