View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_6 (Length: 581)
Name: NF3140_low_6
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Complemental strand, 207888 - 207338
Alignment:
| Q |
16 |
caatactaatattacccgtcatcatgactcaatatat--cttttattttcttttaacaaaataacaacaattgctaaaaaatacatttgaactattttct |
113 |
Q |
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| T |
207888 |
caatactaatattacccgtcatcatgacccaatatatatcttttattttcttttaacaaaataaaaacaattgctaaaaaatacatttgaactattttct |
207789 |
T |
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| Q |
114 |
taaatatatgattcagtcttcaaataaatattaaaacaataaaaacaattataagtattcggttttaatgaaaacaatgaattttgtaaaattaactcaa |
213 |
Q |
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| T |
207788 |
taaatatatgattcagtcttcaaataaatattaaaacaaaaaaaacaattataagtattcggttttaatgaaaacaatgaattttgtaaaattaactcaa |
207689 |
T |
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| Q |
214 |
tgcaattgcagaggaaacacagacagtaataacaaaataagtcaaattgaaaggtaacatccacggatccaccaactacaatgcacacagtaatattctg |
313 |
Q |
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| T |
207688 |
tgcaattgcagaggaaacacagacagtaataacaaaataagtcaaattgaaaggtaacatccac--------caactacaatgcacacagtaatattctg |
207597 |
T |
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| Q |
314 |
tccgagtaattgacttattcctaatattttatttgtgtacaagtcataaactcgtactctttcgtataagaatgcattttctttcaaacattttgccgtg |
413 |
Q |
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| T |
207596 |
tccgagtaattgacttattcctaatattttatttgtgtacaagtcataaactcgtactctttcgtataagaatgcattttctttcaaacattttgccgtg |
207497 |
T |
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| Q |
414 |
ttggatttcaaaactcaaatttagttgctttttgggttgttcagacttaaaaattcaaagtagtgaaagaataataata---ataaccttccaaccccgc |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
207496 |
ttggatttcaaaactcaaatttagttgctttttgggttgttcagacttaaaaattcaaagtagtgaaagaataataataataataaccttccaaccccgc |
207397 |
T |
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| Q |
511 |
caccagctacaagttaagtcaataaagaacaaaacaagcctttttccaattaatcttca |
569 |
Q |
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| T |
207396 |
caccagctacaagttaagtcaataaagaacaaaacaagcctttttccaattaatcttca |
207338 |
T |
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