View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_65 (Length: 221)
Name: NF3140_low_65
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_65 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28754463 - 28754683
Alignment:
| Q |
1 |
atcttcaggatcatctttagtaacaaaacaatcagcagcttttatcacaccttcatcctccacagccgcgcttaaattcggcatagcaacgtttttaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
28754463 |
atcttcaggatcatctttagtaacaaaacaatcagcagcttttatcacaccttcatcctccacagccgcgcttaaattcggcaaagcaacttttttaacc |
28754562 |
T |
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| Q |
101 |
ttgtgatcaccctcagtcacatcatctttaactccttgaagctcgttactcaatgcaactttctccacatcctcgccctcctgtttgatctgaacaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28754563 |
ttgtgatcaccctcagtcacatcatctttaactccttgaagctcgttactcaatgcaactttctccacatcctcgccctcctgtttgatctgaacaccat |
28754662 |
T |
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| Q |
201 |
cattcaatccaaaaatcaaac |
221 |
Q |
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||||||||||||||| ||||| |
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| T |
28754663 |
cattcaatccaaaaaccaaac |
28754683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 44864281 - 44864172
Alignment:
| Q |
112 |
ctcagtcacatcatctttaactccttgaagctcgttactcaatgcaactttctccacatcctcgccctcctgtttgatctgaacaccatcattcaatcca |
211 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||| ||| | || ||||| | ||||||||||||||||||| || |
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| T |
44864281 |
ctcagtcacatcatcttcaactccttgaacctcattactcaatgcaactttccccacattctcacgctgctgttcaacctgaacaccatcattcaattca |
44864182 |
T |
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| Q |
212 |
aaaatcaaac |
221 |
Q |
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|||| ||||| |
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| T |
44864181 |
aaaaccaaac |
44864172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 45248167 - 45248329
Alignment:
| Q |
1 |
atcttcaggatcatctttagtaacaa---aacaatcagcagcttttatcacaccttcatcctccacagccgcgcttaaattcggcatagcaacgttttta |
97 |
Q |
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|||||||| ||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||| | || || ||||| | || |||||| | || |
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| T |
45248167 |
atcttcagaatcatctttagtaacaacaaaactatcagcagcttttaaaacaccgtcatcctccacaactgcactaaaatttgccaaagcaacatcgtt- |
45248265 |
T |
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| Q |
98 |
accttgtgatcaccctcagtcacatcatctttaactccttgaagctcgttactcaatgcaactttc |
163 |
Q |
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|| ||| | ||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
45248266 |
--ctcgtgcttgtgctcagtcacatcatcttcaactccttgaacctcattactcaatgcaactttc |
45248329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44864392 - 44864314
Alignment:
| Q |
1 |
atcttcaggatcatctttagta---acaaaacaatcagcagcttttatcacaccttcatcctccacagccgcgcttaaa |
76 |
Q |
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|||||||||||||| ||||||| ||||||| |||||||||||||| ||||| ||||||||||| ||| ||||||| |
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| T |
44864392 |
atcttcaggatcatatttagtagcaacaaaactatcagcagcttttaaaacaccgccatcctccacaaccgtgcttaaa |
44864314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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