View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_73 (Length: 206)
Name: NF3140_low_73
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 16439483 - 16439649
Alignment:
| Q |
18 |
cacagagtaaaggcaaatcttgtaggtccaagagtctctattgggagcttttttagcactagtcttcatccatctacaaggatttatggtcccataaagg |
117 |
Q |
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| T |
16439483 |
cacagggtaaaggcaaatcttgtaggtccaagagtctctattgggagcttttttagcactagtcttcatccatctacaaggatttatggtcccataaagg |
16439582 |
T |
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| Q |
118 |
aactattatctgaagagaactctgcaaaatatagagaaactttaatatcagattgtatagtctactt |
184 |
Q |
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| T |
16439583 |
aactattatctgaagagaactctgcaaaatatagagaaactttaatatcagattgtatagtctactt |
16439649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 16441899 - 16441746
Alignment:
| Q |
18 |
cacagagtaaaggcaaatcttgtaggtccaagagtctctattgggagcttttttagcactagtcttcatccatctacaaggatttatggtcccataaagg |
117 |
Q |
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| T |
16441899 |
cacagagtactgtcaaatctcgtaggtccaagagtctctattgcatgtttttttagcactcgtcatcatccaactacaaggatttatggtcccatcaagg |
16441800 |
T |
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| Q |
118 |
aactattatctgaagagaactctgcaaaatatagagaaactttaatatcagatt |
171 |
Q |
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| T |
16441799 |
aactattatctgaagacaatcctgcaaaatatagagaaacttcaatttcagatt |
16441746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 16425614 - 16425461
Alignment:
| Q |
18 |
cacagagtaaaggcaaatcttgtaggtccaagagtctctattgggagcttttttagcactagtcttcatccatctacaaggatttatggtcccataaagg |
117 |
Q |
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| T |
16425614 |
cacagagtactgtcaaatctcgtaggtccaagagtctctattgcatgtttttttagcactcgtcatcatccaactacaaggatttatggtcccatcaagg |
16425515 |
T |
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| Q |
118 |
aactattatctgaagagaactctgcaaaatatagagaaactttaatatcagatt |
171 |
Q |
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|||||||||| ||||| || ||||||||||||||||||||| ||| ||||||| |
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| T |
16425514 |
aactattatccgaagacaatcctgcaaaatatagagaaacttcaatttcagatt |
16425461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 16414324 - 16414195
Alignment:
| Q |
30 |
gcaaatcttgtaggtccaagagtctctattgggagcttttttagcactagtcttcatccatctacaaggatttatggtcccataaaggaactattatctg |
129 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||| ||||||||| | ||||||||| |||||||||||||||| |
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| T |
16414324 |
gcaaatcttgtaggtccaagagtctctattgcaagcttttttggcacactgcatcatccaactacaaggacatttggtcccatcaaggaactattatctg |
16414225 |
T |
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| Q |
130 |
aagagaactctgcaaaatatagagaaactt |
159 |
Q |
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| T |
16414224 |
atgaaaactctgcaaaatataaagaaactt |
16414195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 16418658 - 16418613
Alignment:
| Q |
31 |
caaatcttgtaggtccaagagtctctattgggagcttttttagcac |
76 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
16418658 |
caaatcttgtaggtccaagagtctctattgcaagcttttttggcac |
16418613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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