View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3140_low_8 (Length: 551)
Name: NF3140_low_8
Description: NF3140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3140_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 313 - 540
Target Start/End: Original strand, 7981718 - 7981941
Alignment:
| Q |
313 |
cttacaggtctctggtgattaggacttgagttgggatgaccatttagtgattcagtttccaaacttgccatatttgcagaaaagtgaacaaaggtagaga |
412 |
Q |
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| T |
7981718 |
cttacaggtctctggtgattaggacttgagttgggatgaccatttagtgattcagtttccaaacttgccatatttgcagaaaagtgaacaaagggagaga |
7981817 |
T |
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| Q |
413 |
gcaagcaaaccaagaacaacgttttggtttggttagaaaatagcaaccaaataattatgatatggtgattctaatctaaatgaacattagtctaatgtgt |
512 |
Q |
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| T |
7981818 |
gcaagcaaaccaagaacaacgttttggtttggttagaaaatagcaaccaaataattatgatatggtgattctaatctaaatgaacattagtctaatgtgt |
7981917 |
T |
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| Q |
513 |
atttatatatataagaactactagtata |
540 |
Q |
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| T |
7981918 |
att----tatataagaactactagtata |
7981941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 7981399 - 7981626
Alignment:
| Q |
18 |
attttgtgtgtcctttcttgttaaagattagtcatcattaaatggtggtagaaacttcatactaataccatgataatccnnnnnnnnnntggttatttat |
117 |
Q |
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| T |
7981399 |
attttgtgtgttctttcttgttaaagactagtcatcattaa-tgatggtagaaacttcatactaataccatgataatccagaaaaaaa-tggttatttat |
7981496 |
T |
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| Q |
118 |
tttggggagttcgcatataaaatggttaaatagcactactctnnnnnnntatattctaagatgttgtaaaatatctatcataagaagaatgaaaacatga |
217 |
Q |
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| T |
7981497 |
tttggggagtttgcatataaaatggttaaatagcactactctaaaaaaatatattctaagatgttgtaaaatatctatcataagaagaatgaaaacatga |
7981596 |
T |
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| Q |
218 |
aaataaaacaaatatagtaataagatgtat |
247 |
Q |
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| T |
7981597 |
aaataaaacaaatatagtaataagatgtat |
7981626 |
T |
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