View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3142_high_16 (Length: 250)
Name: NF3142_high_16
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3142_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4594202 - 4594442
Alignment:
| Q |
10 |
aagaatatgccggttagacaaaggaagaaaactaacagaaaatatttggaaaaatggttataaagagataggattaatgatgttggaggattgaagtatg |
109 |
Q |
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| T |
4594202 |
aagaaaatgccggttagacaaaggaagaaaactaacagaaaatatttggaaaaatggttataaagagataggattaatgatgttggaggattgaagtatg |
4594301 |
T |
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| Q |
110 |
tatacacacacatatagtacaagttttttatatcaacaaattccatatggttttctttatgtcacataacataaatttcagatgatgctgagaactcact |
209 |
Q |
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| T |
4594302 |
tatacacacacatatagtacaagttttttatatcaacaaattccatatggttttcattatgtcacataacataaatttcagatgatgctgagaactcact |
4594401 |
T |
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| Q |
210 |
tgagcatgaaccgaactaccaacatataaaacgtgaactaa |
250 |
Q |
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| T |
4594402 |
tgagcatgaaccgaactaccaacatataaaacgtgaactaa |
4594442 |
T |
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