View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3142_high_17 (Length: 236)

Name: NF3142_high_17
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3142_high_17
NF3142_high_17
[»] chr5 (5 HSPs)
chr5 (136-235)||(35233492-35233591)
chr5 (1-59)||(36572803-36572861)
chr5 (1-60)||(35233357-35233416)
chr5 (1-57)||(8897496-8897552)
chr5 (1-60)||(23991035-23991094)
[»] chr3 (3 HSPs)
chr3 (1-59)||(41717562-41717620)
chr3 (1-59)||(43333571-43333629)
chr3 (1-60)||(46092860-46092919)
[»] chr7 (4 HSPs)
chr7 (1-56)||(42663199-42663254)
chr7 (1-58)||(33223430-33223487)
chr7 (1-57)||(38096340-38096396)
chr7 (143-171)||(16829701-16829729)
[»] chr6 (5 HSPs)
chr6 (1-60)||(25995553-25995612)
chr6 (1-60)||(26095016-26095075)
chr6 (1-58)||(17768039-17768096)
chr6 (1-59)||(1688273-1688332)
chr6 (1-56)||(29173104-29173159)
[»] chr2 (5 HSPs)
chr2 (1-60)||(10749580-10749639)
chr2 (1-56)||(36180618-36180673)
chr2 (1-56)||(28244258-28244313)
chr2 (1-60)||(36816317-36816376)
chr2 (11-59)||(3933072-3933120)
[»] chr8 (7 HSPs)
chr8 (1-60)||(39021344-39021403)
chr8 (4-60)||(44068782-44068838)
chr8 (1-56)||(2520020-2520075)
chr8 (1-60)||(6162059-6162118)
chr8 (1-60)||(44086413-44086472)
chr8 (4-60)||(42659320-42659375)
chr8 (28-56)||(43873619-43873647)
[»] chr1 (6 HSPs)
chr1 (1-59)||(9445217-9445275)
chr1 (1-59)||(17390749-17390807)
chr1 (1-60)||(23226314-23226373)
chr1 (11-56)||(27091479-27091524)
chr1 (1-38)||(51866202-51866239)
chr1 (1-60)||(6841902-6841961)
[»] chr4 (4 HSPs)
chr4 (4-60)||(19245999-19246055)
chr4 (1-56)||(6309355-6309410)
chr4 (8-60)||(38134090-38134142)
chr4 (11-51)||(40983250-40983290)
[»] scaffold0153 (1 HSPs)
scaffold0153 (1-57)||(18642-18698)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 35233492 - 35233591
Alignment:
Q  136 ttatcgtaaaatggttgtgcaaatatcatttttcttatagcagtacggtactattagcacatatagtctagtggtttggccaaaatcaacaagagataat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  35233492 ttatcgtaaaatggttgtgcaaatatcatttttcttatagcagtacggtactattagcacatatagtctagtggtttggccgaaatcaacaggagataat 35233591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36572861 - 36572803
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggt 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  36572861 ttgaacaacaattttttacaactatcatgacaacttctttttcctatctttctattggt 36572803  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35233357 - 35233416
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||| ||||||||||||||  || |||||||||||||||||||||||||||||||    
T  35233357 ttgaacaactattttttacaactattataacaacttctttttcctctctttctattggtc 35233416  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8897552 - 8897496
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattg 57  Q
    |||||||||||||||| |||| || |||||||||||| ||||||||| |||||||||    
T  8897552 ttgaacaaccatttttgacaattatcatgacaacttccttttcctctttttctattg 8897496  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23991035 - 23991094
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||||| ||||||| ||||||| ||| |||||||||||||  ||||||| ||||||||    
T  23991035 ttgaacaatcatttttgacaactatcataacaacttcttttttatctctttttattggtc 23991094  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41717620 - 41717562
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggt 59  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  41717620 ttgaacaaccatttttaacaactatcatgacaacttctttttcctctctttctattggt 41717562  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43333571 - 43333629
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggt 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||    
T  43333571 ttgaacaactattttttacaactatcatgacaacttctttttcctctttttctattggt 43333629  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46092860 - 46092919
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||||||||||||||| || ||| ||||||| |||||||||||||| ||||||||    
T  46092860 ttgaacaaccattttttacaattatcattacaacttttttttcctctctttttattggtc 46092919  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42663254 - 42663199
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctatt 56  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  42663254 ttgaacaaccattttttacaactatcatgacaacttctttttcctatctttctatt 42663199  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33223430 - 33223487
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattgg 58  Q
    ||||| ||| |||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  33223430 ttgaataactatttttgacaactatcatgacaacttctttttcctctctttttattgg 33223487  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38096340 - 38096396
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattg 57  Q
    ||||||||| ||||||||||| ||  ||||||||||||||||| |||||||||||||    
T  38096340 ttgaacaactattttttacaattattatgacaacttctttttcttctctttctattg 38096396  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 16829701 - 16829729
Alignment:
Q  143 aaaatggttgtgcaaatatcatttttctt 171  Q
    |||||||||||||||||||||||||||||    
T  16829701 aaaatggttgtgcaaatatcatttttctt 16829729  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25995612 - 25995553
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  25995612 ttgaacaaccatttttgacaactaccatgacaacttcatttttctctctttctattggtc 25995553  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26095075 - 26095016
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  26095075 ttgaacaaccatttttgacaactaccatgacaacttcatttttctctctttctattggtc 26095016  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17768096 - 17768039
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattgg 58  Q
    ||||||| |||||||| |||||||  ||||||||||||||||||||||||||||||||    
T  17768096 ttgaacatccatttttgacaactatgatgacaacttctttttcctctctttctattgg 17768039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1688273 - 1688332
Alignment:
Q  1 ttgaacaaccatttttt-acaactaccatgacaacttctttttcctctctttctattggt 59  Q
    ||||||||||||||||| |||| || | |||||||||||||||||||||||| |||||||    
T  1688273 ttgaacaaccattttttgacaattatcttgacaacttctttttcctctctttttattggt 1688332  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29173159 - 29173104
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctatt 56  Q
    |||||||||| ||| | |||| || ||||||||||||||||| |||||||||||||    
T  29173159 ttgaacaaccttttatgacaattatcatgacaacttcttttttctctctttctatt 29173104  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10749580 - 10749639
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  10749580 ttgaacaaccatttttgacaactatcatgacaacttccttttcctctctttctattggtc 10749639  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36180673 - 36180618
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctatt 56  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  36180673 ttgaacaactattttttacaactatcatgacaacttctttttcctctctttctatt 36180618  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28244258 - 28244313
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctatt 56  Q
    |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  28244258 ttgaacaaccattttttacaaccatcatgacaacttcttttttctctctttctatt 28244313  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36816317 - 36816376
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||||| ||||||| ||||||| |||||||||| | ||||||||||||||||||||||    
T  36816317 ttgaacaatcatttttgacaactatcatgacaactgcattttcctctctttctattggtc 36816376  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3933120 - 3933072
Alignment:
Q  11 attttttacaactaccatgacaacttctttttcctctctttctattggt 59  Q
    |||||| |||| || |||| |||||| ||||||||||||||||||||||    
T  3933120 atttttgacaattatcatggcaacttttttttcctctctttctattggt 3933072  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39021344 - 39021403
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||    
T  39021344 ttgaacaaccatttttgacaactatcatgacaacttctttttcgtctatttctattggtc 39021403  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 44068838 - 44068782
Alignment:
Q  4 aacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||| |||||| ||||||| |||||||||||| |||| |||||||||||||||||    
T  44068838 aacaactatttttgacaactatcatgacaacttcctttttctctctttctattggtc 44068782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2520075 - 2520020
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctatt 56  Q
    ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||    
T  2520075 ttgaacaactattttctacaactatcatgataacttatttttcctctctttctatt 2520020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6162118 - 6162059
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||  |||||| ||||||| |||||||||||| ||| ||||||||||||||||||    
T  6162118 ttgaacaataatttttgacaactatcatgacaacttcctttacctctctttctattggtc 6162059  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44086413 - 44086472
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    |||||||| ||||||| |||| || ||||| |||||| ||||||||||||||||||||||    
T  44086413 ttgaacaatcatttttgacaattatcatgataacttccttttcctctctttctattggtc 44086472  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 42659320 - 42659375
Alignment:
Q  4 aacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||||||| ||||||| |||||||| || |||| ||||||||| ||||||||    
T  42659320 aacaaccatttttgacaactatcatgacaaatt-ttttccctctctttatattggtc 42659375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 43873619 - 43873647
Alignment:
Q  28 tgacaacttctttttcctctctttctatt 56  Q
    |||||||||||||||||||||||||||||    
T  43873619 tgacaacttctttttcctctctttctatt 43873647  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9445275 - 9445217
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggt 59  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||    
T  9445275 ttgaacaaccattttttacaactatcatgacaacttctttttcctacctttccattggt 9445217  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17390807 - 17390749
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggt 59  Q
    ||||||||| |||||| ||||||| ||||||||||| ||||||||||||||| ||||||    
T  17390807 ttgaacaactatttttgacaactatcatgacaacttttttttcctctctttcaattggt 17390749  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23226314 - 23226373
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||| |||||| | || || |||||||| ||||||||||||||||||||||||||    
T  23226314 ttgaacaactatttttgataattatcatgacaatttctttttcctctctttctattggtc 23226373  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 27091479 - 27091524
Alignment:
Q  11 attttttacaactaccatgacaacttctttttcctctctttctatt 56  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||    
T  27091479 attttttacaactatcatgacaatttctttttcctctctttttatt 27091524  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51866202 - 51866239
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  51866202 ttgaacaaccattttttacaactatcatgacaacttct 51866239  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6841961 - 6841902
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||| |||||| ||||||| |||||||||||  |||| |||||||| ||||||||    
T  6841961 ttgaacaactatttttgacaactatcatgacaactttctttttctctctttttattggtc 6841902  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 19246055 - 19245999
Alignment:
Q  4 aacaaccattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||    
T  19246055 aacaaccatttttgacaactatcatgataacttccttttcctctctttctattggtc 19245999  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6309410 - 6309355
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctatt 56  Q
    ||||||||| ||||||||||||||  ||||||||||||||||  ||||||||||||    
T  6309410 ttgaacaactattttttacaactattatgacaacttcttttttttctctttctatt 6309355  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 38134142 - 38134090
Alignment:
Q  8 accattttttacaactaccatgacaacttctttttcctctctttctattggtc 60  Q
    ||||||||| |||||||  |||||||||||||||| | |||||||||||||||    
T  38134142 accatttttgacaactataatgacaacttcttttttccctctttctattggtc 38134090  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 40983290 - 40983250
Alignment:
Q  11 attttttacaactaccatgacaacttctttttcctctcttt 51  Q
    ||||||||||| ||  |||||||||||||||||||||||||    
T  40983290 attttttacaattattatgacaacttctttttcctctcttt 40983250  T

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Target: scaffold0153 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18698 - 18642
Alignment:
Q  1 ttgaacaaccattttttacaactaccatgacaacttctttttcctctctttctattg 57  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||| ||| |||||    
T  18698 ttgaacaaccattttttacaactacgatgacaacttcatttttctctttttttattg 18642  T

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