View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3142_high_3 (Length: 404)

Name: NF3142_high_3
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3142_high_3
NF3142_high_3
[»] chr1 (11 HSPs)
chr1 (5-288)||(6365916-6366195)
chr1 (166-273)||(6414268-6414375)
chr1 (163-261)||(6356353-6356451)
chr1 (349-389)||(6366265-6366305)
chr1 (164-263)||(6397191-6397290)
chr1 (169-261)||(6371883-6371972)
chr1 (166-263)||(6346846-6346940)
chr1 (169-261)||(6426924-6427013)
chr1 (167-216)||(6357830-6357879)
chr1 (167-216)||(6379499-6379548)
chr1 (164-216)||(6438600-6438652)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 6365916 - 6366195
Alignment:
Q  5 tgtcgaagaatatgccgttacagaggcttaaagggaggaaccatttatgttctttccttgtgaagtgttaacaaacaaggcttaaaccttgtacctttgt 104  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  6365916 tgtcaaagaaaatgccgttacagaggcttaaagggaggaaccatttatgttctttccttgtgaagtgttaaca----aggcttaaaccttgtacctttgt 6366011  T
Q  105 ttgtgttgttctcttgttaaaacaaaaaataaatgatgggagaaggaagaacacaaaacagcaaatcatgggaggaagagatttattggtcccattttca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6366012 ttgtgttgttctcttgttaaaacaaaaaataaatgatgggagaaggaagaacacaaaacagcaaatcatgggaggaagagatttattggtcccattttca 6366111  T
Q  205 attcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaactacttttttctccaaaaatgaaac 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6366112 attcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaactacttttttctccaaaaatgaaac 6366195  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 6414268 - 6414375
Alignment:
Q  166 caaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaact 265  Q
    |||||| ||||||||||||||||| |||  ||||||||| ||||||||||| ||| | |||||||| ||||||||| ||||||||||||||| ||||| |    
T  6414268 caaatcttgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttcttcatagcaccaccaattttcaacaacaacctgtaagt 6414367  T
Q  266 actttttt 273  Q
    || |||||    
T  6414368 accttttt 6414375  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 6356353 - 6356451
Alignment:
Q  163 cagcaaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt 261  Q
    ||||||||| |||||| |||||||||| ||| |||||||||| ||||| ||||| | |   |||||||||| |||||||||||||||||||||||||||    
T  6356353 cagcaaatcttgggagaaagagatttactggacccattttcagttcattcatttcatccaatttcttcaaaccaccaccgattttcaacaacaacttgt 6356451  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 6366265 - 6366305
Alignment:
Q  349 actgcagtgaagaaagttttgagcttttgattattggttat 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6366265 actgcagtgaagaaagttttgagcttttgattattggttat 6366305  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 6397191 - 6397290
Alignment:
Q  164 agcaaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaa 263  Q
    |||| ||| ||||| ||||| ||||| ||| ||||||| || ||||||||||| |||   ||||||||||  |||||| |||||||||||||||||||||    
T  6397191 agcagatcttgggaagaagatatttactggacccatttccagttcatccatttcacccaatttcttcaaactaccaccaattttcaacaacaacttgtaa 6397290  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 6371883 - 6371972
Alignment:
Q  169 atcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt 261  Q
    |||| |||||||||||||||| |||  ||||||||| ||||||||||| ||| | |||||    ||||||||| |||||||||||||||||||    
T  6371883 atcacgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaacaacttgt 6371972  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 6346846 - 6346940
Alignment:
Q  166 caaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaa 263  Q
    |||||||| |||||||   ||||||||| |||||||||| ||||||||||| ||| |||||||    |||| |||||||||||| || ||||||||||    
T  6346846 caaatcattggaggaactcatttattggacccattttcagttcatccatttcaccctttttct---gagcatcaccgattttcaccatcaacttgtaa 6346940  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 6426924 - 6427013
Alignment:
Q  169 atcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt 261  Q
    ||||||||||||||| ||||| ||| |||||||||| ||||||||||| ||    |||||||   ||| ||| ||||||||||||||||||||    
T  6426924 atcatgggaggaagacatttactggacccattttcagttcatccatttcactcaatttcttc---gcaacactgattttcaacaacaacttgt 6427013  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 6357830 - 6357879
Alignment:
Q  167 aaatcatgggaggaagagatttattggtcccattttcaattcatccattt 216  Q
    ||||||||||||||||| ||||| ||| |||||||||| |||||||||||    
T  6357830 aaatcatgggaggaagacatttactggacccattttcagttcatccattt 6357879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 6379499 - 6379548
Alignment:
Q  167 aaatcatgggaggaagagatttattggtcccattttcaattcatccattt 216  Q
    ||||||||||||||||| ||||| ||| ||||||| ||||||||||||||    
T  6379499 aaatcatgggaggaagacatttactggacccatttccaattcatccattt 6379548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 6438600 - 6438652
Alignment:
Q  164 agcaaatcatgggaggaagagatttattggtcccattttcaattcatccattt 216  Q
    |||| ||| ||||| ||||| ||||||||| |||||||||||||||| |||||    
T  6438600 agcagatcttgggaagaagatatttattggacccattttcaattcattcattt 6438652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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