View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3142_low_1 (Length: 696)
Name: NF3142_low_1
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3142_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 14 - 681
Target Start/End: Original strand, 44379484 - 44380152
Alignment:
| Q |
14 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379484 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
44379583 |
T |
|
| Q |
114 |
tcaacaaaagggtgnnnnnnntaaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379584 |
tcaacaaaagggtgaaaaaaataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
44379683 |
T |
|
| Q |
214 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379684 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattacactcactcttgcagtgtcatcag |
44379783 |
T |
|
| Q |
314 |
cattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacattcagaaacacaatcacatgaatct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379784 |
cattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacattcagaaacacaatcacatgaatct |
44379883 |
T |
|
| Q |
414 |
tcaaaaccctcttcaaaaacaactcttatctgtctctgtcatctcctataaaacacagaacac-actttgcattaannnnnnnnnnnnnnnngctcagaa |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
44379884 |
tcaaaaccctcttcaaaaacaactcttatctgtctctgtcatctcctataaaacacagaacacaactttgcattaaacacacacacacacacgctcagaa |
44379983 |
T |
|
| Q |
513 |
acacatcacaggaaaaaaccacctcacataactatacatagtactcaaacaatgtcagagacagaagaaaatattgaaacattaaaggagggaagtgttg |
612 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379984 |
acacatcacaggaaaaaaccacctcacgtaactatacatagtactcaaacaatgtcagagacagaagaaaatattgaaacattaaaggagggaagtgttg |
44380083 |
T |
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| Q |
613 |
gagcgtataaatgaatatgaaagagtgattcttttcttgataaaacaagttttgtaacaaatagttctt |
681 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44380084 |
gagcgtataaatgaatatgaaagagtgattcttttcttgataaaacaagttttgtaacaaatagttctt |
44380152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 28846887 - 28846937
Alignment:
| Q |
333 |
attcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaac |
383 |
Q |
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|||| |||||||||| ||||||| || ||| |||||||||||||||||||| |
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| T |
28846887 |
attcatgttatgtgaccctgcaattagtctcccattagtgtccattgaaac |
28846937 |
T |
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