View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3142_low_13 (Length: 274)

Name: NF3142_low_13
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3142_low_13
NF3142_low_13
[»] chr1 (1 HSPs)
chr1 (8-258)||(8141805-8142052)
[»] chr5 (2 HSPs)
chr5 (33-199)||(22210106-22210273)
chr5 (62-166)||(5351790-5351895)
[»] chr2 (3 HSPs)
chr2 (33-168)||(9130594-9130730)
chr2 (83-166)||(31037298-31037381)
chr2 (217-256)||(9130812-9130851)
[»] chr4 (1 HSPs)
chr4 (77-166)||(34730207-34730297)
[»] chr7 (1 HSPs)
chr7 (81-166)||(17907155-17907241)
[»] chr3 (4 HSPs)
chr3 (89-166)||(34786053-34786131)
chr3 (62-166)||(20166768-20166873)
chr3 (62-166)||(47652330-47652434)
chr3 (206-252)||(47953982-47954028)
[»] chr6 (1 HSPs)
chr6 (33-171)||(490848-490991)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 8141805 - 8142052
Alignment:
Q  8 ccaagaatatagtacctaaaacctatcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcct 107  Q
    |||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8141805 ccaataatatagtaccaaaaatctatcttggtggaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcct 8141904  T
Q  108 cactatctgaaaatgaggataatattatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatttagatttt 207  Q
    || ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8141905 cattatctgaaaatgaggataatattatgttggagaa---gagaataattagatcttttatcaccgattaaaacttaaaactaccaattatttagatttt 8142001  T
Q  208 ttgagttttaagtcacttttaatttctgttaatggctttctgcaataattt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8142002 ttgagttttaagtcacttttaatttctgttaatggctttctgcaataattt 8142052  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 22210273 - 22210106
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-a 131  Q
    |||| |||||||| |||| |||||||||||| |||||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  22210273 tcttagtagaatcggaagtagagtttgaggatattgatttagatgattcaatagaagaagttgaaggatgtgcctcactatctgaaaatgaggataatga 22210174  T
Q  132 ttatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatt 199  Q
    ||||||||| |||||||||||||| || ||||||||||||   |||||||||| ||||||||||||||    
T  22210173 ttatgttggggaagaggagaataactatatcttttatcactagttagaacttagaactaccaattatt 22210106  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 5351790 - 5351895
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 160  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| |||||||||||||||| ||    
T  5351790 gacattgattctgaggattcagttgaagaagttgaaggatatgcctcactatgtggaaatggggataatgattatgttggggaagaggagaataattgga 5351889  T
Q  161 tctttt 166  Q
    ||||||    
T  5351890 tctttt 5351895  T

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Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 9130594 - 9130730
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-ta 131  Q
    |||||||||||||||||||||||||| |||| |||||||| ||  ||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||    
T  9130594 tcttggtagaatcagaagcagagtttaaggaaattgattcagacaattcaattgaagaagttgacggaaatgcctcactatctgaaaatgaggacaatta 9130693  T
Q  132 ttatgttggagaagaggagaataattagatcttttat 168  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9130694 ttatgttggggaagaggagaataattagatcttttat 9130730  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 31037381 - 31037298
Alignment:
Q  83 attgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    |||||| ||||||||||||||||||||| |||| |  ||| ||||||| |||||| ||| ||||| |||||||| ||||||||||    
T  31037381 attgaaaaagttgaaggatatgcctcacgatct-agtatgtggataatgattatgctggggaagaagagaataaatagatctttt 31037298  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 9130812 - 9130851
Alignment:
Q  217 aagtcacttttaatttctgttaatggctttctgcaataat 256  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  9130812 aagtcacttttaatttctgcttatggctttctgcaataat 9130851  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 34730297 - 34730207
Alignment:
Q  77 gattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||    
T  34730297 gattccatttaaaaagttgaaggatatgcctcactatctgaaaatgaggataatgatgatgttagggaagaggagaataattagatctttt 34730207  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 17907241 - 17907155
Alignment:
Q  81 caattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattagatctttt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| | |||||||||| ||||||||||||||    
T  17907241 caatttaagaagttgaacgatatgcctcactatctgaaaatgaagataattattatgtttgggaagaggagagtaattagatctttt 17907155  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 34786131 - 34786053
Alignment:
Q  89 gaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  34786131 gaagttgaaggagatgcctaactaactgaaaatgaggataatgattatgttggggaagaggagaataattagatctttt 34786053  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 20166768 - 20166873
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 160  Q
    ||||||||||| || ||||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||| |  || |||| ||||||||||    
T  20166768 gacattgattctgaggattctatttaagaagttgaaggatatgcctcactatcgcaaaatgaggataatgattatgttaggaaataggaaaataattaga 20166867  T
Q  161 tctttt 166  Q
    ||||||    
T  20166868 tctttt 20166873  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 47652434 - 47652330
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattaga 160  Q
    |||||||||| | | |||||| || ||||||||||||||||||||||||||||| ||||||| |||||  |||||||||  ||||||||||||| |||||    
T  47652434 gacattgattacaaggattcattt-aagaagttgaaggatatgcctcactatctaaaaatgaagataacgattatgttgtggaagaggagaatagttaga 47652336  T
Q  161 tctttt 166  Q
    ||||||    
T  47652335 tctttt 47652330  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 47954028 - 47953982
Alignment:
Q  206 ttttgagttttaagtcacttttaatttctgttaatggctttctgcaa 252  Q
    ||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  47954028 ttttgagttttaagtcatttttaatttatgtttctggctttctgcaa 47953982  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 490991 - 490848
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaa---aatgaggataa 129  Q
    |||||||| ||||| |||||||||| ||||| |||||||| | ||||||||||||| |||||||  ||||||| |||  | |||||   || ||||||||    
T  490991 tcttggtataatcaaaagcagagttagaggatattgattcaggtgattcaattgaaaaagttgacagatatgcttcaaaacctgaaaacaacgaggataa 490892  T
Q  130 t-attatgtt-ggagaagaggagaataattagatcttttatcac 171  Q
    | |||||||| || ||||||||| ||||||||||||||||||||    
T  490891 tgattatgttgggggaagaggagcataattagatcttttatcac 490848  T

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