View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3142_low_16 (Length: 251)
Name: NF3142_low_16
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3142_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 6011012 - 6010870
Alignment:
| Q |
99 |
actcaaaaataaattcaagagtaaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattatttacgaa |
198 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6011012 |
actcaaaaataaattcaagaataaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattatttacgaa |
6010913 |
T |
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| Q |
199 |
caaactctgccgtagaatttaaatcgatcaagcctcagaataa |
241 |
Q |
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| T |
6010912 |
caaactcggccgtagaatttaaatcaatcaagcctcaaaataa |
6010870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 6018962 - 6018817
Alignment:
| Q |
99 |
actcaaaaataaattcaagagtaaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattatttacgaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6018962 |
actcaaaaataaattcaagagtaaaaaattaaaggcatagaacaatttaattcattcatcctaaataaaataataaattaatttacatattatttacgaa |
6018863 |
T |
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| Q |
199 |
caaa-------ctctgccgtagaatttaaatcgatcaagcctcaga |
237 |
Q |
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| T |
6018862 |
caaatttattcctcggccgtagaatttaaatcaatcaagcctcaga |
6018817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 6016254 - 6016128
Alignment:
| Q |
103 |
aaaaataaattcaagagtaaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattatttacgaacaaa |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6016254 |
aaaaataaattcaagtgtaaaaaattaaaggcatagaacaatttaattcattcatcctaaagaaaataataaattaatttacatattatttactaacaaa |
6016155 |
T |
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| Q |
203 |
ctctgccgtagaatttaaatcgatcaa |
229 |
Q |
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||| || |||||||||||||| ||||| |
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| T |
6016154 |
ctcggctgtagaatttaaatcaatcaa |
6016128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 6022646 - 6022547
Alignment:
| Q |
103 |
aaaaataaattcaagagtaaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattatttacgaacaaa |
202 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||| || ||||| ||||||||| |
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| T |
6022646 |
aaaaataaattcaagtgtaaaaaattaaaggtatagaacaattgagttcattcatcgcaaaagaaataataaattaatttatatgttattcacgaacaaa |
6022547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 14073633 - 14073728
Alignment:
| Q |
99 |
actcaaaaataaattcaagagtaaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattattta |
194 |
Q |
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| T |
14073633 |
actcaaaaataaatttaagtgcaaaacataaaatatatacaacaattgagttcactcatctcaaacaaaataataaattaatttacatattattta |
14073728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 14149371 - 14149419
Alignment:
| Q |
146 |
tagttcattcatcctaaagaaaataataaattaatttacatattattta |
194 |
Q |
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| T |
14149371 |
tagttcactcatctcaaacaaaataataaattaatttacatattattta |
14149419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 1119086 - 1118991
Alignment:
| Q |
99 |
actcaaaaataaattcaagagtaaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattattta |
194 |
Q |
| |
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|||||||||||||||||||||||||| | |||| ||| ||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||| |
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| T |
1119086 |
actcaaaaataaattcaagagtaaaacgtaaaagatatacaacaattgagttcactcatctcaaacaaaataataaattaatttacatattattta |
1118991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 7961205 - 7961150
Alignment:
| Q |
139 |
aacaatttagttcattcatcctaaagaaaataataaattaatttacatattattta |
194 |
Q |
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||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||| |
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| T |
7961205 |
aacaattgagttcactcatctcaaacaaaataataaattaatttacatattattta |
7961150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 9982938 - 9983033
Alignment:
| Q |
99 |
actcaaaaataaattcaagagtaaaaaattaaaggcatagaacaatttagttcattcatcctaaagaaaataataaattaatttacatattattta |
194 |
Q |
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||||||||||||||||||| |||||| | |||| | | |||||| ||| || ||||| ||| |||||||||||||||||||||||||||||| |
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| T |
9982938 |
actcaaaaataaattcaagtgtaaaacgtaaaagatacacgacaattgagtgcactcatctcaaacaaaataataaattaatttacatattattta |
9983033 |
T |
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