View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3142_low_2 (Length: 458)
Name: NF3142_low_2
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3142_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 12881258 - 12880844
Alignment:
| Q |
19 |
aaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacatagag--tgacttgtatgtattttagttttagtaacag |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12881258 |
aaaatgcagacatctccaacctttatgctattgccacagacaaaatccgtccatcctccacatagagagtgacttgtatgtattttagttttagtaacag |
12881159 |
T |
|
| Q |
117 |
aattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatgcaccatcgaaaattgatggggtatattcatagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
12881158 |
aattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcatttcgg----------atcgaaaattgatggggtatattcatagt |
12881069 |
T |
|
| Q |
217 |
acgagaaccactgacaaatcacccaatgagcagtttttggttcttttgccggttggttagatgggagactgaatagctatggtcttagggcctgcatcag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
12881068 |
acgagaaccactgacaaatcacccaatgagcagtttttggttcttttgccggttggttggatgggagactgaatagctatggtcttag-------atcag |
12880976 |
T |
|
| Q |
317 |
ccgtgaactgctcagaagaatcaccagcattaaaagtcttttgattgatagtttcaaaaggtacagccaatggagttccgcattgatttcttcaacagaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12880975 |
ccgtgaactgctcagaagaatcaccagcattaaaagtcttttgattgatagcttcaaaaggtacagccaatggagttccgtattgatttcttcaacagaa |
12880876 |
T |
|
| Q |
417 |
ttgtttgtttccgatccattgctacccctttg |
448 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
12880875 |
ttgtttgtttccgatccattgctatccctttg |
12880844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 6350904 - 6350709
Alignment:
| Q |
18 |
gaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacatagag--tgacttgtatgtattttagttttagtaaca |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6350904 |
gaaaatgcagacatctccaacctttatgctattgccacgaacaaaatccatccatcctccacatagagagtgacttgtatgtattttagttttagtaaca |
6350805 |
T |
|
| Q |
116 |
gaattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatgcaccatcgaaaattgatggggtatattc |
211 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||| ||||| || |||||||||||| || |||||||||||| ||| |||||| |
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| T |
6350804 |
gaattaacaagccagtgttctcccttcaaattttgaagaaaaatcggtgtatcgctgtttggaagatgcgccgtcgaaaattgatagggcatattc |
6350709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 6338358 - 6338174
Alignment:
| Q |
18 |
gaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacatagagtg--acttgtatgtattttagttttagtaaca |
115 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| | | ||||| | | |||| |
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| T |
6338358 |
gaaaatgcagacatctccaacttttatgctattgccacgaacaaaagccatccatcctccacatagagtgtgacttgtatgcactctagttgttggaaca |
6338259 |
T |
|
| Q |
116 |
gaattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatgcaccatcgaaaattgat |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||| ||| |||||||||||||| |
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|
| T |
6338258 |
gaattaacagtccagtgttctcccttcaaattataaagaataatctttgtcttgcaatttggaaaatgtgacatcgaaaattgat |
6338174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 6423076 - 6422881
Alignment:
| Q |
18 |
gaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacatagagtg--acttgtatgtattttagttttagtaaca |
115 |
Q |
| |
|
||||| |||||||||| ||| ||||||| ||||| ||| |||||| |||||||||||||||||||||| ||||||||| | | || || ||| |||| |
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| T |
6423076 |
gaaaacgcagacatctccaagctttatgttattggcacgaacaaaagacatccatcctccacatagagtgtgacttgtatgcactctacttctaggaaca |
6422977 |
T |
|
| Q |
116 |
gaattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatgcaccatcgaaaattgatggggtatattc |
211 |
Q |
| |
|
|||||| || |||| |||||||||||||||||| |||||| ||||||| | |||| ||||||||||| | || |||||||||||||||| |||| |
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| T |
6422976 |
gaattagcagtccactgttctcccttcaaattacgaagaataatctttatcttgccgtttggaagatgtgctatggaaaattgatggggtacattc |
6422881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 6362137 - 6361956
Alignment:
| Q |
18 |
gaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacataga--gtgacttgtatgtattttagttttagtaaca |
115 |
Q |
| |
|
|||||| ||||||||| ||| ||||| ||||||||||| ||||||| || ||||||||| |||||| |||||||| ||| | | ||||| ||| |||| |
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| T |
6362137 |
gaaaatacagacatctccaatctttaggctattgccacgaacaaaattcaaccatcctccgcatagaatgtgacttgcatgcaatctagttctaggaaca |
6362038 |
T |
|
| Q |
116 |
gaattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatgcaccatcgaaaatt |
197 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||| ||||||| | ||||| ||||||||||| || ||||||||| |
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|
| T |
6362037 |
gaattgacggtccactgttctcccttcaaattatgaagagtaatctttatcttgcagtttggaagatgatccttcgaaaatt |
6361956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 6383855 - 6383688
Alignment:
| Q |
18 |
gaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacatagagtg--acttgtatgtattttagttttagtaaca |
115 |
Q |
| |
|
|||||||||||||||| |||| |||||| | ||||||| ||||||| || ||||||||||||||||||| | ||||| | | ||||| | | |||| |
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|
| T |
6383855 |
gaaaatgcagacatctccaacttttatgttgttgccacgaacaaaattcacccatcctccacatagagtgtgatctgtattcactctagttgttggaaca |
6383756 |
T |
|
| Q |
116 |
gaattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatg |
183 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| ||||||| | |||| ||||||||||| |
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|
| T |
6383755 |
gaattaacagtccattgttctcccttcaaattatgaagaataatctttatcttgcggtttggaagatg |
6383688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 6349226 - 6349131
Alignment:
| Q |
253 |
ttggttcttttgccggttggttagatgggagactgaatagctatggtcttagggcctgcatcagccgtgaactgctcagaagaatcaccagcatta |
348 |
Q |
| |
|
||||||||||| || |||||| || |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||| ||||| |
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|
| T |
6349226 |
ttggttctttttccagttggtatgaagggagactgaatagctgtggtcttagggactgcatcatccgtgaactgctcaggagaatcaccaccatta |
6349131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 6369575 - 6369380
Alignment:
| Q |
18 |
gaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacatagagtg--acttgtatgtattttagttttagtaaca |
115 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||||| || |||||| |||||||||| ||||||||||| |||| | | | ||||| | ||| |||| |
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|
| T |
6369575 |
gaaaatgcagacatctccaattttaatgttattggcatgaacaaaagacatccatcctgcacatagagtgtgactttttggcactttagctgtaggaaca |
6369476 |
T |
|
| Q |
116 |
gaattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatgcaccatcgaaaattgatggggtatattc |
211 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||| ||||||| | ||| |||| |||||| |||| ||||||||| ||||||||||| |
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|
| T |
6369475 |
gaattgacaatccaacattctcccttcatattatgaagaataatctttatcctgccttttttaagatgttccatagaaaattgacggggtatattc |
6369380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 6359288 - 6359231
Alignment:
| Q |
338 |
caccagcattaaaagtcttttgattgatagtttcaaaaggtacagccaatggagttcc |
395 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| ||||||||| ||||| ||||| |
|
|
| T |
6359288 |
caccagcattaaaagtcttttcattggtagtttcaacaggtacagctaatggtgttcc |
6359231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 6349116 - 6349076
Alignment:
| Q |
404 |
ttcttcaacagaattgtttgtttccgatccattgctacccc |
444 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
6349116 |
ttcttcaatagaattgtttgtttccgatgcattgctacccc |
6349076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 6374358 - 6374287
Alignment:
| Q |
112 |
aacagaattaacaatccagtgttctcccttcaaattatgaagaaaaatctttgtattgcattttggaagatg |
183 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||||||||||||| ||| | | |||| | |||||||||||| |
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|
| T |
6374358 |
aacagcattaacagtccaacgttctcccttcaaattatgaagaataatttgtatatttccttttggaagatg |
6374287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 6372728 - 6372674
Alignment:
| Q |
340 |
ccagcattaaaagtcttttgattgatagtttcaaaaggtacagccaatggagttc |
394 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
6372728 |
ccagcattaaaagtctttccgttggtagtttcaaaaggtacagcaaatggtgttc |
6372674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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