View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3142_low_3 (Length: 404)
Name: NF3142_low_3
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3142_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 6365916 - 6366195
Alignment:
| Q |
5 |
tgtcgaagaatatgccgttacagaggcttaaagggaggaaccatttatgttctttccttgtgaagtgttaacaaacaaggcttaaaccttgtacctttgt |
104 |
Q |
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| T |
6365916 |
tgtcaaagaaaatgccgttacagaggcttaaagggaggaaccatttatgttctttccttgtgaagtgttaaca----aggcttaaaccttgtacctttgt |
6366011 |
T |
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| Q |
105 |
ttgtgttgttctcttgttaaaacaaaaaataaatgatgggagaaggaagaacacaaaacagcaaatcatgggaggaagagatttattggtcccattttca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6366012 |
ttgtgttgttctcttgttaaaacaaaaaataaatgatgggagaaggaagaacacaaaacagcaaatcatgggaggaagagatttattggtcccattttca |
6366111 |
T |
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| Q |
205 |
attcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaactacttttttctccaaaaatgaaac |
288 |
Q |
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| T |
6366112 |
attcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaactacttttttctccaaaaatgaaac |
6366195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 6414268 - 6414375
Alignment:
| Q |
166 |
caaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaact |
265 |
Q |
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| T |
6414268 |
caaatcttgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttcttcatagcaccaccaattttcaacaacaacctgtaagt |
6414367 |
T |
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| Q |
266 |
actttttt |
273 |
Q |
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| T |
6414368 |
accttttt |
6414375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 6356353 - 6356451
Alignment:
| Q |
163 |
cagcaaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt |
261 |
Q |
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| T |
6356353 |
cagcaaatcttgggagaaagagatttactggacccattttcagttcattcatttcatccaatttcttcaaaccaccaccgattttcaacaacaacttgt |
6356451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 6366265 - 6366305
Alignment:
| Q |
349 |
actgcagtgaagaaagttttgagcttttgattattggttat |
389 |
Q |
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| T |
6366265 |
actgcagtgaagaaagttttgagcttttgattattggttat |
6366305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 6397191 - 6397290
Alignment:
| Q |
164 |
agcaaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaa |
263 |
Q |
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| T |
6397191 |
agcagatcttgggaagaagatatttactggacccatttccagttcatccatttcacccaatttcttcaaactaccaccaattttcaacaacaacttgtaa |
6397290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 6371883 - 6371972
Alignment:
| Q |
169 |
atcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt |
261 |
Q |
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| T |
6371883 |
atcacgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaacaacttgt |
6371972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 6346846 - 6346940
Alignment:
| Q |
166 |
caaatcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgtaa |
263 |
Q |
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|||||||| ||||||| ||||||||| |||||||||| ||||||||||| ||| ||||||| |||| |||||||||||| || |||||||||| |
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| T |
6346846 |
caaatcattggaggaactcatttattggacccattttcagttcatccatttcaccctttttct---gagcatcaccgattttcaccatcaacttgtaa |
6346940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 6426924 - 6427013
Alignment:
| Q |
169 |
atcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt |
261 |
Q |
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| T |
6426924 |
atcatgggaggaagacatttactggacccattttcagttcatccatttcactcaatttcttc---gcaacactgattttcaacaacaacttgt |
6427013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 6357830 - 6357879
Alignment:
| Q |
167 |
aaatcatgggaggaagagatttattggtcccattttcaattcatccattt |
216 |
Q |
| |
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||||||||||||||||| ||||| ||| |||||||||| ||||||||||| |
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| T |
6357830 |
aaatcatgggaggaagacatttactggacccattttcagttcatccattt |
6357879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 6379499 - 6379548
Alignment:
| Q |
167 |
aaatcatgggaggaagagatttattggtcccattttcaattcatccattt |
216 |
Q |
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||||||||||||||||| ||||| ||| ||||||| |||||||||||||| |
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| T |
6379499 |
aaatcatgggaggaagacatttactggacccatttccaattcatccattt |
6379548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 6438600 - 6438652
Alignment:
| Q |
164 |
agcaaatcatgggaggaagagatttattggtcccattttcaattcatccattt |
216 |
Q |
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| T |
6438600 |
agcagatcttgggaagaagatatttattggacccattttcaattcattcattt |
6438652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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