View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3142_low_4 (Length: 398)

Name: NF3142_low_4
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3142_low_4
NF3142_low_4
[»] chr1 (4 HSPs)
chr1 (28-259)||(15593484-15593714)
chr1 (267-323)||(15593324-15593380)
chr1 (344-387)||(15593256-15593299)
chr1 (79-156)||(861889-861966)
[»] chr7 (3 HSPs)
chr7 (75-117)||(42720925-42720967)
chr7 (86-129)||(9483377-9483420)
chr7 (82-144)||(31924415-31924477)
[»] chr8 (2 HSPs)
chr8 (80-140)||(32145224-32145284)
chr8 (75-119)||(25831682-25831726)
[»] chr4 (2 HSPs)
chr4 (79-117)||(5096131-5096169)
chr4 (78-143)||(43093534-43093599)
[»] chr2 (1 HSPs)
chr2 (79-117)||(12940970-12941008)
[»] chr3 (3 HSPs)
chr3 (86-155)||(26656716-26656785)
chr3 (84-165)||(51733135-51733216)
chr3 (101-165)||(49636813-49636877)
[»] chr6 (1 HSPs)
chr6 (75-151)||(10038445-10038520)
[»] chr5 (1 HSPs)
chr5 (93-145)||(9895147-9895199)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 15593714 - 15593484
Alignment:
Q  28 atgtaacaggactggttttgctctataaagcttgaacttgaacacctacatgacattgacacgttgacaccactaataatttgaaaaaatagaataattg 127  Q
    |||||| ||||||||||||| |||||||||||||||| ||||  | |||||||||||||||| |||||||||||||||||||||||||||||| |||| |    
T  15593714 atgtaataggactggttttgatctataaagcttgaacgtgaatgcttacatgacattgacacattgacaccactaataatttgaaaaaatagattaatcg 15593615  T
Q  128 aacgtagtcacatgtgtttgtgtcgtgtcagtgctacataggtcttgattaatcaactttcctatcaatgcggcagactataagtttccaattcaagcaa 227  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||    
T  15593614 aacatagtcacatgcgtttgtgtcgtgtcagtgctacataggtcttgattcatcaactttcctatcaatgtgggagactataag-ttccaattcaagtaa 15593516  T
Q  228 ctacaaagcctgtaaatcccaatatactagca 259  Q
    ||||||||||||||||| ||||  ||||||||    
T  15593515 ctacaaagcctgtaaattccaacttactagca 15593484  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 15593380 - 15593324
Alignment:
Q  267 gagcaagaatgaagtgttgtcacttgccatcactcatcctggtttcctctattaggg 323  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  15593380 gagcaagaatgaagtgttgtcacttgcaatcactcaccgtggtttcctctatcaggg 15593324  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 15593299 - 15593256
Alignment:
Q  344 gaacaagccaccacaccatcctcatcagttccattccacttcat 387  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15593299 gaacaagccaccacaccatcctcgttagttccattccacttcat 15593256  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 861966 - 861889
Alignment:
Q  79 gacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtc 156  Q
    ||||| ||||||||||||| | |||||||||||||||||   | ||||||| |||||||| |||| | | ||||||||    
T  861966 gacatagacacgttgacactagtaataatttgaaaaaatgacaaaattgaaagtagtcacgtgtgatggggtcgtgtc 861889  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 42720967 - 42720925
Alignment:
Q  75 acatgacattgacacgttgacaccactaataatttgaaaaaat 117  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  42720967 acatgacactgacacgttgacaccgctaataatttgaaaaaat 42720925  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 9483377 - 9483420
Alignment:
Q  86 acacgttgacaccactaataatttgaaaaaatagaataattgaa 129  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||    
T  9483377 acacattgacaccaataataatttgagaaaatagaataattgaa 9483420  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 31924415 - 31924477
Alignment:
Q  82 attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgt 144  Q
    |||||||||||||||||  ||||||||| | ||||||||| |||||||  || ||||||||||    
T  31924415 attgacacgttgacaccgataataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 32145224 - 32145284
Alignment:
Q  80 acattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacat 140  Q
    |||||||||| || |||||| ||||||||||| ||||| |||||||| |||||| ||||||    
T  32145224 acattgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacat 32145284  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 25831726 - 25831682
Alignment:
Q  75 acatgacattgacacgttgacaccactaataatttgaaaaaatag 119  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||    
T  25831726 acataacattgacacgtagacaccactaataatttaagaaaatag 25831682  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 5096169 - 5096131
Alignment:
Q  79 gacattgacacgttgacaccactaataatttgaaaaaat 117  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  5096169 gacattgacacgtcgacaccgctaataatttgaaaaaat 5096131  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 43093599 - 43093534
Alignment:
Q  78 tgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtg 143  Q
    ||||| ||||||||  |||||  ||||||||||||||||| | ||||||||| ||| |||||||||    
T  43093599 tgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtg 43093534  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 12941008 - 12940970
Alignment:
Q  79 gacattgacacgttgacaccactaataatttgaaaaaat 117  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  12941008 gacactgacacgttgacacaactaataatttgaaaaaat 12940970  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 26656785 - 26656716
Alignment:
Q  86 acacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgt 155  Q
    ||||||||||| || || ||||||| ||||||| ||||||| || |||  ||||||||||||||| ||||    
T  26656785 acacgttgacaacagtagtaatttggaaaaataaaataattcaatgtaaccacatgtgtttgtgttgtgt 26656716  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 51733135 - 51733216
Alignment:
Q  84 tgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 165  Q
    ||||| |||||||||  |||||| |||| ||||||||||||||||||||   || ||||||  |||| ||||| ||||||||    
T  51733135 tgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca 51733216  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 49636877 - 49636813
Alignment:
Q  101 taataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 165  Q
    ||||||||||| |||||  | |||||||| ||| ||||||| | | |||||||||||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgtcgtgtcagtgctaca 49636813  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 10038520 - 10038445
Alignment:
Q  75 acatgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtc 151  Q
    |||||||||||||||||| |||||  |||||  | || |||||||||||||||||  || ||||||||||| |||||    
T  10038520 acatgacattgacacgttaacaccggtaatacct-gagaaaatagaataattgaatataatcacatgtgttggtgtc 10038445  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 9895147 - 9895199
Alignment:
Q  93 gacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtt 145  Q
    ||||||| ||||||||||| |||||| | || ||||||||| |||||||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgtt 9895199  T

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