View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3142_low_5 (Length: 398)
Name: NF3142_low_5
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3142_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 6586290 - 6586659
Alignment:
| Q |
13 |
aatatcatcaagtaccaaaactccaagctgccatcacattttcaaaattcaattcaacataaagtttccattcaaatattaattaagtcgaattgaaaat |
112 |
Q |
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| T |
6586290 |
aatatcatcaagtaccaaaactccaagctgccatcacattttcaaaattcaattcaacataaagtttccattcaaatattaattaagtcgaattgaaaat |
6586389 |
T |
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| Q |
113 |
atgaagtttgtgaaaatataccataacataacagctgaagctaaagaaagtttcaaaaaattaaacaaatctgcaaaagctagccatgagaatccactcc |
212 |
Q |
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| T |
6586390 |
atgaagtttgtgaaaatataccataacataacagctgaagctaaagaaagtttcaaaaaattaaacaaatctgcaaaagctagccatgagaatccactcc |
6586489 |
T |
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| Q |
213 |
aagcaccatctgatttggtgatgaaaatgtacaaaagttgaccaatgacaatcaaccaccatgatgtgtttagaataattgcagctccaactaagcccca |
312 |
Q |
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| T |
6586490 |
aagcaccatctgatttggtgatgaaaatgtacaaaagttgaccaatgacaatcaaccaccatgatgtgtttagaataattgcagctccaactaagcccca |
6586589 |
T |
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| Q |
313 |
attaagtttcaatattagaagccaactaagaggtacatgtaacactaaaacacctaatgatatccataac |
382 |
Q |
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| T |
6586590 |
atttagtttcaatattagaagccaactaagaggtacatgtaacactaaaacacctaatgatatccataac |
6586659 |
T |
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