View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3142_low_7 (Length: 356)
Name: NF3142_low_7
Description: NF3142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3142_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 29548768 - 29549095
Alignment:
| Q |
19 |
caggtttcattgcttcatgggttgtcaagtttcttctccaacgtcgttatactgttagagccactgttcgtgaccctagtcagtgcttctttctccttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29548768 |
caggtttcattgcttcatgggttgtcaagtttcttctccaacgtggttatactgttagagccactgttcgtgaccctagtcagtgcttctttctccttgt |
29548867 |
T |
|
| Q |
119 |
ctaaattttaatttgttacattaatttcttggtgttttatattcattttgaatgagtgannnnnnnn-catatctataggtaattccaataaggttgatc |
217 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29548868 |
ctaaattttaatttgtttcattaattttttggtgttttatattcattttgaatgagtgatttttttttcatatctataggtaattccaataaggttgatc |
29548967 |
T |
|
| Q |
218 |
acttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttgattctgttattcaaggatgccatgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29548968 |
acttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgttattcaaggatgccatgg |
29549067 |
T |
|
| Q |
318 |
tgtctttcatactgcttcacccgttcat |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29549068 |
tgtctttcatactgcttcacccgttcat |
29549095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 338
Target Start/End: Original strand, 29555146 - 29555297
Alignment:
| Q |
187 |
atatctataggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggtt |
286 |
Q |
| |
|
|||| |||||||||| | ||||||||||| || || ||||||||||||||||| |||||||||||||| ||||| ||||||||| || |||||||||||| |
|
|
| T |
29555146 |
atatgtataggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggtt |
29555245 |
T |
|
| Q |
287 |
cctttgattctgttattcaaggatgccatggtgtctttcatactgcttcacc |
338 |
Q |
| |
|
| ||||| |||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
29555246 |
catttgaccatgttattcaaggttgtcatggtgtttttcataccgcttcacc |
29555297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 29554943 - 29555007
Alignment:
| Q |
27 |
attgcttcatgggttgtcaagtttcttctccaacgtcgttatactgttagagccactgttcgtga |
91 |
Q |
| |
|
|||||||||||| ||||||| ||||| || |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29554943 |
attgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgttcgtga |
29555007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 195 - 343
Target Start/End: Original strand, 26100937 - 26101085
Alignment:
| Q |
195 |
aggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttgat |
294 |
Q |
| |
|
||||||| | || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
26100937 |
aggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcctttgac |
26101036 |
T |
|
| Q |
295 |
tctgttattcaaggatgccatggtgtctttcatactgcttcacccgttc |
343 |
Q |
| |
|
|||||| || | || || ||||||||||||||||||||||||| |||| |
|
|
| T |
26101037 |
tctgttgttgagggttgtgatggtgtctttcatactgcttcacctgttc |
26101085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 195 - 343
Target Start/End: Original strand, 25933418 - 25933566
Alignment:
| Q |
195 |
aggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttgat |
294 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| ||||| |
|
|
| T |
25933418 |
aggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgac |
25933517 |
T |
|
| Q |
295 |
tctgttattcaaggatgccatggtgtctttcatactgcttcacccgttc |
343 |
Q |
| |
|
|||||| || | || || ||||||||||||||||||||||||| |||| |
|
|
| T |
25933518 |
tctgttgttgagggttgtgatggtgtctttcatactgcttcacctgttc |
25933566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 25933234 - 25933329
Alignment:
| Q |
21 |
ggtttcattgcttcatgggttgtcaagtttcttctccaacgtcgttatactgttagagccactgttcgtgaccctagtcagtgcttctttctcctt |
116 |
Q |
| |
|
||||| |||||||||||| |||| |||||||| || ||| || |||| ||||| ||||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
25933234 |
ggttttattgcttcatggattgttaagtttctccttcaatgtggttacactgtcagagcaactgttcgtcacccaagtcagtgcttctttctcctt |
25933329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 87800 - 87929
Alignment:
| Q |
203 |
ccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttgattctgttat |
302 |
Q |
| |
|
|||| |||||||| |||||| |||| ||||||||||| ||||| || |||||||| || |||||| || |||| ||||||||| |||||||||||||| | |
|
|
| T |
87800 |
ccaagaaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattctgttgt |
87899 |
T |
|
| Q |
303 |
tcaaggatgccatggtgtctttcatactgc |
332 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |
|
|
| T |
87900 |
tcaaggctgtcatggtgtctttcacactgc |
87929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University