View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3143_high_4 (Length: 424)
Name: NF3143_high_4
Description: NF3143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3143_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 34899715 - 34899324
Alignment:
| Q |
1 |
ttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaataactaag |
100 |
Q |
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| T |
34899715 |
ttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaataactaag |
34899617 |
T |
|
| Q |
101 |
aacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagannnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899616 |
aacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagatttttttt |
34899517 |
T |
|
| Q |
201 |
gttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaattagag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899516 |
gttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaattagag |
34899417 |
T |
|
| Q |
301 |
aagtgtcaaaacaaaagggnnnnnnnnttcattgatgaattgtatagacctgatttttaaaattgaggaagaatcttctgataaattaaaaag |
393 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||| ||||| |
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| T |
34899416 |
aagtgtcaaaacaaaagggaaaaaaaattcattgatgaattgtatagccctgatttttagaattgagcaagactcttctgataaatttaaaag |
34899324 |
T |
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