View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3143_high_6 (Length: 335)

Name: NF3143_high_6
Description: NF3143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3143_high_6
NF3143_high_6
[»] chr8 (3 HSPs)
chr8 (16-197)||(44221812-44221979)
chr8 (257-321)||(44222039-44222103)
chr8 (55-153)||(44211733-44211831)
[»] chr5 (1 HSPs)
chr5 (55-150)||(6496106-6496201)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 44221812 - 44221979
Alignment:
Q  16 atgagacaacaatacatgctcaaagacactccttgttgtgattgcttagttcattgctgttgtgaatcatgtgcattgtgtcaagaatatcgtgagcttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44221812 atgagacaacaatacatgctcaaagacactccttgttgtgattgcttagttcattgctgttgtgaatcatgtgcattgtgtcaagaatatcgtgagcttg 44221911  T
Q  116 aaaaccgtggatttgacatggaacttggtatgtatatagtactatatattatgctcttcaatattctttggtggacaattca 197  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||    
T  44221912 aaaaccgtggatttgacatggaacttggtatgtat--------------tatgctcttcaatattctttggtggacaattca 44221979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 44222039 - 44222103
Alignment:
Q  257 catagaaattaaatcactttgaattatagtagtattgtattagtcaactttaatctttgaaattt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44222039 catagaaattaaatcactttgaattatagtagtattgtattagtcaactttaatctttgaaattt 44222103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 44211733 - 44211831
Alignment:
Q  55 gattgcttagttcattgctgttgtgaatcatgtgcattgtgtcaagaatatcgtgagcttgaaaaccgtggatttgacatggaacttggtatgtatata 153  Q
    ||||||||  |||||||||| |||||  | || || |||||||||||||||||||| ||||| |||||||||||| ||||||   ||||||||||||||    
T  44211733 gattgcttgattcattgctgctgtgaggcctgcgccttgtgtcaagaatatcgtgaacttgagaaccgtggatttaacatggtcattggtatgtatata 44211831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 6496106 - 6496201
Alignment:
Q  55 gattgcttagttcattgctgttgtgaatcatgtgcattgtgtcaagaatatcgtgagcttgaaaaccgtggatttgacatggaacttggtatgtat 150  Q
    ||||||||  |||||||||| || ||  |||| || ||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||||    
T  6496106 gattgcttgattcattgctgctgcgaggcatgcgccttgtgtcaagaatatcgtgagcttgaaaaccgtggatttaacatggtcattggtatgtat 6496201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University