View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3143_low_10 (Length: 203)
Name: NF3143_low_10
Description: NF3143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3143_low_10 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: scaffold0591 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 5108 - 5280
Alignment:
| Q |
18 |
aatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5108 |
aatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
5207 |
T |
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| Q |
118 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5208 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
5280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 28626176 - 28626004
Alignment:
| Q |
18 |
aatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
117 |
Q |
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| T |
28626176 |
aatggaaatggagagaggagatcagaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
28626077 |
T |
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| Q |
118 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28626076 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
28626004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 28701190 - 28701018
Alignment:
| Q |
18 |
aatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
117 |
Q |
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||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| || |||||||||| | | ||||||||||||||| |||| |
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| T |
28701190 |
aatggaaatggagagaggaggtcagaaaaaaaagaattagaagatgaagaaagtttctcatttggtatacagctttgcaactctatggtgctaccaatgg |
28701091 |
T |
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| Q |
118 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28701090 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
28701018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 28712092 - 28711920
Alignment:
| Q |
18 |
aatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
117 |
Q |
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||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| | || |||||||||||||| |||| |
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| T |
28712092 |
aatggtaatggagagaggagatcagaaaaacaagaattagaagatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatgg |
28711993 |
T |
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| Q |
118 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28711992 |
cactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgc |
28711920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 28719439 - 28719267
Alignment:
| Q |
18 |
aatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
117 |
Q |
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||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| | || |||||||||||||| |||| |
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| T |
28719439 |
aatggtaatggagagaggagatcagaaaaacaagaattagaagatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatgg |
28719340 |
T |
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| Q |
118 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28719339 |
cactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgc |
28719267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 28727081 - 28726909
Alignment:
| Q |
18 |
aatggaaatggagagaggaaatccgaaaaacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatgg |
117 |
Q |
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||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| | || |||||||||||||| |||| |
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| T |
28727081 |
aatggtaatggagagaggagatcagaaaaacaagaattagaagatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatgg |
28726982 |
T |
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| Q |
118 |
tactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28726981 |
cactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgc |
28726909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 28731753 - 28731609
Alignment:
| Q |
46 |
aacaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgt |
145 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28731753 |
aacatgaattagaagatgaagaaagtttcttatatgctatacagctttgcaactctatggtgctaccaatggtactccattctgcaagtcagcttggtgt |
28731654 |
T |
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| Q |
146 |
atttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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| T |
28731653 |
ttttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
28731609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 28740624 - 28740548
Alignment:
| Q |
114 |
atggtactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
28740624 |
atgggactccattctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaagatgctcaactctctgc |
28740548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 28644561 - 28644498
Alignment:
| Q |
127 |
ctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28644561 |
ctgcaagtcagcttggtgtatttgatgtgttgcaaaaaactggtaaaggtgctcaactctctgc |
28644498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 28636828 - 28636764
Alignment:
| Q |
126 |
tctgcaagtcagcttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgc |
190 |
Q |
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||||||| | |||||||||| |||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
28636828 |
tctgcaactgagcttggtgtttttgatgttttgcaaaaagctggaaaagatgctcaactctctgc |
28636764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 29645808 - 29645857
Alignment:
| Q |
138 |
cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctc |
187 |
Q |
| |
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|||||||| ||||| |||||||||||||| |||||||||||||||||||| |
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| T |
29645808 |
cttggtgtttttgaagtgttgcaaaaagccggtaaaggtgctcaactctc |
29645857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 49110289 - 49110255
Alignment:
| Q |
45 |
aaacaagaattagaagatgaagaaagtttctcata |
79 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
49110289 |
aaacaagaattagaagatgaagaaagcttctcata |
49110255 |
T |
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