View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3143_low_2 (Length: 689)
Name: NF3143_low_2
Description: NF3143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3143_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 15 - 676
Target Start/End: Complemental strand, 43031212 - 43030549
Alignment:
| Q |
15 |
aagaagcaccctgtttatgatggtgcgaggaatttttacactcctagttcgcttccttttacacacagagttcaatatactattgattgaggatgttgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43031212 |
aagaagcaccctgtttatgatggtgcgaggaatttttacactgctagttcgcttccttttacacacacagttcaatatactattgattgaggatgttgag |
43031113 |
T |
|
| Q |
115 |
ggtattggtactgcaag----gtgattgattgttcaaaaaactaccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaattt |
210 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43031112 |
ggtattggtactgcaagcaaggtgattgattgttcaaaaaaataccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaattt |
43031013 |
T |
|
| Q |
211 |
gtgtgttttaggggaaagagaatttgaagttgcaatcgagnnnnnnnngcatggatcagttacatgagcttctcaatggnnnnnnngtggaaactcccca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||||||| |
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| T |
43031012 |
gtgtgttttaggggaaagagaatttgaagttgcaatcgagttttttttgcatggatcagttaca--agcttctcagtggaaaaaaagtggaaactcccca |
43030915 |
T |
|
| Q |
311 |
agaagctatcaatgccattgacattgtattgaaagagcttgcatctcataggtgaatttctgcttggtctttcaaattttaacatatcatattattgttt |
410 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
43030914 |
agaagctatcaatgccattgacattttattgaaagagcttgcatctcataggtgaatttctgcctggtctttcaaattttatcatatcatattattgttt |
43030815 |
T |
|
| Q |
411 |
cttacaccttaatttacatctttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttggaatc |
510 |
Q |
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| T |
43030814 |
cttacaccttaatttgcatctttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttggaatc |
43030715 |
T |
|
| Q |
511 |
atggtgcggtttcttgcaaagtataaggcctactcagatgggattgccacatgatgttggtgagaattctaccatatcttcatctttttctaatgagatt |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030714 |
atggtgcggtttcttgcaaagtataaggcctactcagatgggattgtcacatgatgttggtgagaattctaccatatcttcatctttttctaatgagatt |
43030615 |
T |
|
| Q |
611 |
tttgtctcagccctcctcttattgggggagaagggctttgataatccaaagttaggccgataagta |
676 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030614 |
tttgtctcggccctcctcttattgggggagaagggctttgataatccaaagttaggccgataagta |
43030549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 605
Target Start/End: Original strand, 46527188 - 46527788
Alignment:
| Q |
15 |
aagaagcaccctgtttatgatggtgcgaggaatttttacactcctagttcgcttccttttacacaca--gagttcaatatactattgattgaggatgttg |
112 |
Q |
| |
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||||||| |||||||||||||||||| |||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
46527188 |
aagaagctccctgtttatgatggtgcagagaatctttacactgccggttcgcttccttttacacacaaagagttcaatatactattgattgaggatgatg |
46527287 |
T |
|
| Q |
113 |
agggtattggtactgcaaggtgattgattg-ttcaaaaaactaccatgtaaattttctttaaacttttggattttgtaacaaatatga-gttgtaaattt |
210 |
Q |
| |
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||||| |||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
46527288 |
agggttttggtactacaaggtgattgatttattcaagaaaaaaccatgtaaattttctttaaatttttggattttgtaacaaatatgaagttgtaaattt |
46527387 |
T |
|
| Q |
211 |
gtgtgttttaggggaaagagaatttgaagttgcaatcgagnnnnnnnngcatgg--------atcagttacatgagcttctcaatggnnnnnnngtggaa |
302 |
Q |
| |
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||||||| |||||||| ||||||||||||||||| || |||| ||||||||||||||||||||| ||| |||||| |
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| T |
46527388 |
gtgtgttca--gggaaagaaaatttgaagttgcaatcaagtttttagctcatgttagtatgcatcagttacatgagcttctcagtggaaaaaaagtggaa |
46527485 |
T |
|
| Q |
303 |
actccccaagaagctatcaatgccattgacattgtattgaaagagcttgcatctcataggtgaatttctgcttggtctttcaaattttaacatatcatat |
402 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| | |
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| T |
46527486 |
actccacaagaagctatcaatgccattgacattgtattgaaggagcttgcatctcataggtgaatttgagctttgtctttcaagttttaacatatcatgt |
46527585 |
T |
|
| Q |
403 |
tattgtttcttacaccttaatttacatctttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggc |
502 |
Q |
| |
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|||||||||| |||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46527586 |
tattgtttctgacaccttaatttgtatatttagctatgtatcatttgggagcttacactattctccggatttaaaaaaaccacataagctgagtggtggc |
46527685 |
T |
|
| Q |
503 |
ttggaatcatggtgcggtttcttgcaaagtataaggcctactcagatgggattgccacatgatgttggtgagaattctaccatatcttcatctttttcta |
602 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||| | | | |||||||||||| ||||||||||||||||| ||||| || |
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| T |
46527686 |
ttggaatcatggagcggtttctatcaaagtataaggcctactcagatgggattatcgcttaatgttggtgagacttctaccatatcttcatattttttta |
46527785 |
T |
|
| Q |
603 |
atg |
605 |
Q |
| |
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||| |
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|
| T |
46527786 |
atg |
46527788 |
T |
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