View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3143_low_5 (Length: 417)
Name: NF3143_low_5
Description: NF3143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3143_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Original strand, 36516078 - 36516470
Alignment:
| Q |
9 |
agcaaaggcatttctgtatatgtgtccttgtggaacataatcatgagagtcctcaagaggcactacggtgtcattggttctcaacaaggcttgttttatc |
108 |
Q |
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| T |
36516078 |
agcaaaggcatttctgtagatgtgtccttgtggaacataatcatgagagtcctcaagaggcactacggtgtcattggttctcaacaaggcttgttttatc |
36516177 |
T |
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| Q |
109 |
aatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaattcaattctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36516178 |
aatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaattcaattctc |
36516277 |
T |
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| Q |
209 |
cattgttggccattgaattatatcttccctcatcctcctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatatagctaggtt |
308 |
Q |
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| T |
36516278 |
cattgttggccattgaattatatcttccctcatcctcctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatatagctaggtt |
36516377 |
T |
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| Q |
309 |
gtgcacaaaatcaaaatcacatgtatgtgggaaagaagnnnnnnngacaattattggacaaagtattcatctattatatatacaccttgtatg |
401 |
Q |
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| T |
36516378 |
gtgcacaaaatcaaaatcacatgtatgtgggaaagaagaaaaaaagacaattattggacaaagtattcatctattatatatacaccttgtatg |
36516470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 36805148 - 36804819
Alignment:
| Q |
9 |
agcaaaggcatttctgtatatgtgtccttgtggaacataatcatgagagtcctcaagaggcact------acggtgtcattggttctcaacaaggcttgt |
102 |
Q |
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| T |
36805148 |
agcaaaggcatttctgtaaatgtctccttgtggaacaaaatcatgagagtcctcaagaggtagtgctagtacggtgtcatttgttcttaacaaggcttgt |
36805049 |
T |
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| Q |
103 |
tttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaattca |
202 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36805048 |
tttatcaatgctcttgcttttgcaagacttccttctaccttctccaaatttctatcttcttgcattgatcttcttataggcaatttgttacctaaattca |
36804949 |
T |
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| Q |
203 |
attctccattgttggccattgaattatatcttccctcatcctcctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatatagc |
302 |
Q |
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| T |
36804948 |
attctccattgtatgccattggcttatatcttccctcatcctcctatatgtacaaaaacaacaaaacaaagtattaatcaaacattaattaccat-tagc |
36804850 |
T |
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| Q |
303 |
taggttgtgcacaaaatcaaaatcacatgtat |
334 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
36804849 |
tagg-tgtgcacaaaatcaaaatcacatgtat |
36804819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 36538450 - 36538601
Alignment:
| Q |
57 |
gtcctcaagaggcactacggtgtcattggttctcaacaaggcttgttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaattttta |
156 |
Q |
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|||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36538450 |
gtcctcaagaggtagtacagtgtcattggttctcat-aaggcttgttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttcta |
36538548 |
T |
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| Q |
157 |
tctccttgcattgatcttcttataggcaatttgttatctaaattcaattctcc |
209 |
Q |
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| T |
36538549 |
tctccttgcattgatcttcttatgggcaatttgttaactaaaatcaattctcc |
36538601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 246 - 401
Target Start/End: Original strand, 36538617 - 36538771
Alignment:
| Q |
246 |
ctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatatagctaggttgtgcac-aaaatcaaaatcacatgtatgtgggaaaga |
344 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||||||| | |
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| T |
36538617 |
ctacatgtacaaaaacaacaaaacaaaatattaatcaaacattaattaatctctagctaggttgtgtacaaaaatcaaaatcacatgtatgtgggaaaaa |
36538716 |
T |
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| Q |
345 |
agnnnnnnngacaattattggacaaagtattcatctattatatatacaccttgtatg |
401 |
Q |
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|| || ||||||||||||| |||||||| || ||||||||||||||||| |
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| T |
36538717 |
ag--aagaagaaaattattggacaacgtattcattcatgttatatacaccttgtatg |
36538771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 36520323 - 36520382
Alignment:
| Q |
9 |
agcaaaggcatttctgtatatgtgtccttgtggaacataatcatgagagtcctcaagagg |
68 |
Q |
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|||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
36520323 |
agcaaatgcatttctgtagatgtctccttgtggaacataatcatgagagtcctcaagagg |
36520382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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