View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3143_low_8 (Length: 238)
Name: NF3143_low_8
Description: NF3143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3143_low_8 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37570059 - 37569836
Alignment:
| Q |
1 |
tttgaatattagcaccaacagtttcttcatgcaatcccaatcctaataatgtctttgctctaacaagacctttagaagaaatagtaacttttcttccaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37570059 |
tttgaatattagcaccaacagtttcttcatgcaatcccaatcctaataatgtctttgctctaacaagacctttagaagaaatagtaacttttcttccaga |
37569960 |
T |
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| Q |
101 |
acctgtcttgaaaagagaattcgtgagtggtgcatccttaccaccactaacactaccactatcaagttgcgcaactttattctcagaacccatgtgcaac |
200 |
Q |
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| T |
37569959 |
acctgtcttgaaaagcgaattcgtgagtggtgcatccttaccaccactaacactaccactatcaagttgcgcaactttattctcagaacccatgtgcaac |
37569860 |
T |
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| Q |
201 |
ctaccaactaaaggactttgaaac |
224 |
Q |
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| T |
37569859 |
ctaccaactaaaggactttgaaac |
37569836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37569510 - 37569388
Alignment:
| Q |
1 |
tttgaatattagcaccaacagtttcttcatgcaatcccaatcctaataatgtctttgctctaacaagacctttagaagaaatagtaacttttcttccaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37569510 |
tttgaatattagcaccaacagtttcttcatgcaatcccaatcctaataatgtctttgctctaacaagacctttagaagaaatagtaacttttcttccaga |
37569411 |
T |
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| Q |
101 |
acctgtcttgaaaagagaattcg |
123 |
Q |
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| T |
37569410 |
acctgtcttgaaaagcgaattcg |
37569388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 37570219 - 37570151
Alignment:
| Q |
156 |
ccactatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaac |
224 |
Q |
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| T |
37570219 |
ccactatctggttgcacaaatttactctcaaaaccattcttcaacctaccaactaaaggactttgaaac |
37570151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 30219 - 30318
Alignment:
| Q |
22 |
tttcttcatgcaatcccaatcctaataatgtctttgctctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagagaatt |
121 |
Q |
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||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||| | ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
30219 |
tttcttcttgcaatcccaatcctagtaacgtctttgctctaacaagaccattagaagatagagtaacttttcttcctgaagctgtcttgaaaagagaatt |
30318 |
T |
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