View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3143_low_9 (Length: 223)
Name: NF3143_low_9
Description: NF3143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3143_low_9 |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold1301 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 613 - 406
Alignment:
| Q |
1 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
100 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||| | |
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| T |
613 |
acaaacaaacaaagcaagtaatggagagttttgtgtcagaaacagccctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcat |
514 |
T |
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| Q |
101 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagc |
200 |
Q |
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| T |
513 |
ggacacctacaggaagacgaatcttgacattccactcttggaaaagctccagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagc |
414 |
T |
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| Q |
201 |
gtacatgt |
208 |
Q |
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|||||||| |
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| T |
413 |
gtacatgt |
406 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17310953 - 17311151
Alignment:
| Q |
1 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
100 |
Q |
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||||||||||||| |||||||| | || |||||| ||||||| |||||||||||| || ||||| | |||||||||||||||||||| | |||||| |
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| T |
17310953 |
acaaacaaacaaagcaagtaatggaaggtattgtgttagaaacactcctctcaacttgcgtcaaagtcatgttaaacaagattgtttctagtgagttcgt |
17311052 |
T |
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| Q |
101 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttag |
199 |
Q |
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| T |
17311053 |
ggacaactacaggaggacgaagcttgatgtttcgctcttggaaaatctcaagacagaactgctcagttttgaagttgtagttaacgatgatgctgttag |
17311151 |
T |
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