View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3144A-Insertion-1 (Length: 208)
Name: NF3144A-Insertion-1
Description: NF3144A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3144A-Insertion-1 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 6085565 - 6085765
Alignment:
| Q |
8 |
agattcatcaacatacaatcgaactctcttggacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcc |
107 |
Q |
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| T |
6085565 |
agattcatcaacatacaatcgaactctcttgaacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcc |
6085664 |
T |
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| Q |
108 |
tttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaacttgtttttgtagggttatttgtccctagaagttgattgtaagtccctg |
207 |
Q |
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| T |
6085665 |
tttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaacttgtttttgtagggttatttgtccctagaagttgattgtaagtccctg |
6085764 |
T |
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| Q |
208 |
c |
208 |
Q |
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| T |
6085765 |
c |
6085765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 6035650 - 6035452
Alignment:
| Q |
10 |
attcatcaacatacaatcgaactctcttggacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcctt |
109 |
Q |
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| T |
6035650 |
attcatcaacatacaatcgaactctatcgtacctcaaatcaaaggtaacacatgaaccaggggacaccacttctattttaacctcagacatctcttcctt |
6035551 |
T |
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| Q |
110 |
tatttttctctctgcttcttctgcagtgacaccaactagctcaggccaacttgtttttgtagggttatttgtccctagaagttgattgtaagtccctgc |
208 |
Q |
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| T |
6035550 |
tatttttctctttgcttcttcaacagtgacaccaactagctctggccaacttgttttagtagggttatttctccttaaacgttggttgtaagtccctgc |
6035452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 6070489 - 6070666
Alignment:
| Q |
8 |
agattcatcaacatacaatcgaactctcttggacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcc |
107 |
Q |
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||||| ||||||||||||||||||||| | || | |||||||||||||||| | |||| ||||||||| |||||||||||||| || |||||| |
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| T |
6070489 |
agattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcc |
6070588 |
T |
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| Q |
108 |
tttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaacttgtttttgtagggttatttgtccct |
185 |
Q |
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| T |
6070589 |
tttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgttggattatttctccct |
6070666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 6055870 - 6055752
Alignment:
| Q |
67 |
cagggggcaccacttgaatttcaactccagatatatcttcctttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaacttgtttt |
166 |
Q |
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|||| ||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||||| |||| || || | |
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| T |
6055870 |
caggtggcaccactcgaatttcaactccatgcatctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttct |
6055771 |
T |
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| Q |
167 |
tgtagggttatttgtccct |
185 |
Q |
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||| || |||||| ||||| |
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| T |
6055770 |
tgttggattatttctccct |
6055752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 6055914 - 6055874
Alignment:
| Q |
8 |
agattcatcaacatacaatcgaactctcttggacctgaaat |
48 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
6055914 |
agattgatcaacatacaatcgaactctcttgaacctgaaat |
6055874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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