View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3144A-Insertion-3 (Length: 379)
Name: NF3144A-Insertion-3
Description: NF3144A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3144A-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 48366670 - 48366365
Alignment:
| Q |
8 |
ggtaataggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagac |
107 |
Q |
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| T |
48366670 |
ggtaataggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagac |
48366571 |
T |
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| Q |
108 |
ttgaaactctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttccctctgaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48366570 |
ttgaaactctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttccctctgaa |
48366471 |
T |
|
| Q |
208 |
ccctttctgcatctttagtcatcaactcgaattcttcaataactttgtccatgttaaactctttcactctctctaacatcctcactcacaccccttcaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48366470 |
ccctttctgcatctttagtcatcaactcgaattcttcaataactttgtccatgttaaactctttcactctctctaacatcctcactcacaccccttcaac |
48366371 |
T |
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| Q |
308 |
aaagtt |
313 |
Q |
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| |||| |
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| T |
48366370 |
agagtt |
48366365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 18046496 - 18046702
Alignment:
| Q |
14 |
aggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagacttgaaa |
113 |
Q |
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| T |
18046496 |
aggttttgtagtgagaaaagaagaagcatcaccatcaataattctgttgatact-ggttccaaatctttgtgtgtaacaagtggaacacataacttgaaa |
18046594 |
T |
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| Q |
114 |
ctctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttccctctgaacccttt |
213 |
Q |
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| T |
18046595 |
ctctcaggatcagttcttccattaagacccaaattttgcaaatattctgctaatgcattatcctccaaaattcgtttcagtgttactctttgaacccttg |
18046694 |
T |
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| Q |
214 |
ctgcatct |
221 |
Q |
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|||||||| |
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| T |
18046695 |
ctgcatct |
18046702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 10244357 - 10244550
Alignment:
| Q |
15 |
ggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagacttgaaac |
114 |
Q |
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|||||||| ||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| ||||||| ||| | | ||||| ||| | |||||| | |
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| T |
10244357 |
ggttttccggtgagaataggagaaacatcaccatcaacaattctattaatataaggttccaaatctttgtaagtgaccaatggaacacatgccttgaagc |
10244456 |
T |
|
| Q |
115 |
tctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttccctctgaac |
208 |
Q |
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| ||| ||||||||||||||| || || ||| ||||||| ||||||||||||||||| ||||||||||| || || ||||| ||| ||||||| |
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| T |
10244457 |
tttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcatttacttccaaaatcctcttcagtgtatccttctgaac |
10244550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 10266326 - 10266519
Alignment:
| Q |
15 |
ggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagacttgaaac |
114 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||| ||| | | ||||| ||| | |||||| | |
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| T |
10266326 |
ggttttccagtgagaataggagaaaaatcaccatcaactattctattgatataaggttccaaatctttgtaagtgaccaatggaacacatgccttgaagc |
10266425 |
T |
|
| Q |
115 |
tctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttccctctgaac |
208 |
Q |
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| ||| ||||||||||||||| || || ||| ||||||| ||||||||||||||||| |||||||||| || || ||||||||| ||||||| |
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| T |
10266426 |
tttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcatttccttccaaaatcctcttcagtgtttccttctgaac |
10266519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 13980450 - 13980644
Alignment:
| Q |
27 |
agaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagacttgaaactctcaagatcag |
126 |
Q |
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|||||||||||| |||||||||||| ||||||||||||| |||||||| | |||||||| ||| | ||||||| ||| | ||||||||| || |||||| |
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| T |
13980450 |
agaataggagaagcatcaccatcaataattctattgatataaggttccgaatctttgtgtgtaacaagtggaacacatgccttgaaactttcgggatcag |
13980549 |
T |
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| Q |
127 |
ttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttccctctgaaccctttctgcatct |
221 |
Q |
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|| |||||| |||||| |||||||| ||||||| ||||||||||| |||||||||||| ||| | ||| | | | |||||| ||||||||||| |
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| T |
13980550 |
tttttccattaagacctaaattctgtaaatattgcgctgatgcattgtcttccaaaattcgtttcaatgtattcatttgaaccttttctgcatct |
13980644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 10274083 - 10274276
Alignment:
| Q |
15 |
ggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagacttgaaac |
114 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| ||||||| ||| | | ||||| ||| | |||||| | |
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| T |
10274083 |
ggttttccggtgagaataggagaaacatcaccatcaacaattctattaatataaggttccaaatctttgtaagtgaccaatggaacacatgccttgaagc |
10274182 |
T |
|
| Q |
115 |
tctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttccctctgaac |
208 |
Q |
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| ||| ||||||||||||||| || || ||| ||||||| ||||||||||||||||| |||||||||| || || ||||| ||| ||||||| |
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| T |
10274183 |
tttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtctccttctgaac |
10274276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 10285888 - 10286057
Alignment:
| Q |
15 |
ggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagacttgaaac |
114 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||| ||||||| |||| ||| ||||| ||||||| | | | | ||||| |||| |||||||| |
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| T |
10285888 |
ggttttccggtgagaataggagaaacatcaccatcaaccattctatcgatataagtctccaaatctttgtaaatgaccaatggaacacaacccttgaaac |
10285987 |
T |
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| Q |
115 |
tctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaat |
184 |
Q |
| |
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| T |
10285988 |
tttcaagatcagttctaccattcagccctaaactttgcaaatattcagatgatgcattttcttccaaaat |
10286057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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