View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3144A-Insertion-4 (Length: 343)

Name: NF3144A-Insertion-4
Description: NF3144A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3144A-Insertion-4
NF3144A-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-343)||(2732634-2732967)
[»] chr6 (2 HSPs)
chr6 (8-146)||(28738725-28738862)
chr6 (8-77)||(28738691-28738760)
[»] chr4 (1 HSPs)
chr4 (13-146)||(56061631-56061765)
[»] chr8 (3 HSPs)
chr8 (22-100)||(33102236-33102313)
chr8 (8-83)||(4568018-4568093)
chr8 (107-145)||(10228615-10228653)
[»] chr2 (5 HSPs)
chr2 (93-146)||(33629504-33629557)
chr2 (8-77)||(33629522-33629591)
chr2 (8-75)||(38909036-38909104)
chr2 (29-72)||(11758639-11758682)
chr2 (19-146)||(36944461-36944587)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 2732634 - 2732967
Alignment:
Q  8 gttcccacttgagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgactacattcattttctttgttcttg 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2732634 gttcccactttagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgactacattcattttctttgttcttg 2732733  T
Q  108 aatggtagttagctatcgttgaagttaaatgtgtaatttatgtgtcnnnnnnnnnnagcaaaaattgaagtggaacaataaaagtctttcttatgtgtaa 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||          | || ||||||||||||||||| |||||||||||| ||||||||    
T  2732734 aatggtagttagctatcgttgaagttaaatgtgtaatttctgtgtctttttttt--aacagaaattgaagtggaacaacaaaagtctttctcatgtgtaa 2732831  T
Q  208 gatcaagaggtgtttccttttaccccaaggattgtcgggacatgttaaacaattgcattgacaaacattcaagcatttgtattccccgataatctgttta 307  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2732832 gatcaagaggtgtttccttgtaccccaaggattgtcgggacatgttaaacaattgcattgacaaacattcaagcatttgtattccccgataatttgttta 2732931  T
Q  308 atcaccaactgagagtcccttatgacttgaatatga 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  2732932 atcaccaactgagagtcccttatgacttgaatatga 2732967  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 28738862 - 28738725
Alignment:
Q  8 gttcccacttgagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgactacattcattttctttgttcttg 107  Q
    |||||||||| |||||||  |||||||||||||||||||||||||| |||| |||  ||||  | ||||||| ||||| | ||| ||||||  |||| ||    
T  28738862 gttcccacttcagtttttacttgaaaacacatgaaaattacacattaaactccaatggtagcga-ctaccgtctgacttccttcgttttctcagttcctg 28738764  T
Q  108 aatggtagttagctatcgttgaagttaaatgtgtaattt 146  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28738763 aatggtagttagctatcgttgaggttaaatgtgtaattt 28738725  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 28738691 - 28738760
Alignment:
Q  8 gttcccacttgagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactacc 77  Q
    ||||||| || |||||| | || ||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  28738691 gttcccatttcagttttcgcttaaaaacacatgaaaattacacatttaacctcaacgatagctaactacc 28738760  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 56061631 - 56061765
Alignment:
Q  13 cacttgagtttttgtttgaaaacacatgaaaattacacatttaact-tcaacagtagttaactaccgtttgactacattcattttctttgttcttgaatg 111  Q
    ||||| |||||||| |||||||||||||||||||||||||||| ||   ||| |||||||| |||| || |||| | | | ||||||||||| |  ||||    
T  56061631 cactttagtttttgcttgaaaacacatgaaaattacacatttatctcaaaacggtagttaattaccattcgacttcctccgttttctttgttttcaaatg 56061730  T
Q  112 gtagttagctatcgttgaagttaaatgtgtaattt 146  Q
    ||| ||||||||||||||||||||||||| |||||    
T  56061731 gtaattagctatcgttgaagttaaatgtgaaattt 56061765  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 33102236 - 33102313
Alignment:
Q  22 ttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgactacattcattttcttt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| | | ||| |||||||| | ||||||||||||    
T  33102236 ttttgtttgaaaacacataaaaattacacatttaacttcaacggtagctga-tactgtttgacttccttcattttcttt 33102313  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 4568018 - 4568093
Alignment:
Q  8 gttcccacttgagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttga 83  Q
    |||||||||| | ||||||  ||||||||| || |||||||   ||||||| |||| |||||||||||||||||||    
T  4568018 gttcccacttcaatttttgcatgaaaacacgtggaaattacgtgtttaactccaacggtagttaactaccgtttga 4568093  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 10228615 - 10228653
Alignment:
Q  107 gaatggtagttagctatcgttgaagttaaatgtgtaatt 145  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  10228615 gaatagtagttagctatcgttgaggttaaatgtgtaatt 10228653  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 33629504 - 33629557
Alignment:
Q  93 ttttctttgttcttgaatggtagttagctatcgttgaagttaaatgtgtaattt 146  Q
    ||||||||||||  |||||||||||||||| |||||  ||||||||||||||||    
T  33629504 ttttctttgttcccgaatggtagttagctaccgttggggttaaatgtgtaattt 33629557  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 33629591 - 33629522
Alignment:
Q  8 gttcccacttgagtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactacc 77  Q
    ||||||| || || ||||| ||||||||||||| ||||||||||||||||  |||| |||| ||||||||    
T  33629591 gttcccatttcagattttgcttgaaaacacatggaaattacacatttaaccccaacggtagctaactacc 33629522  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 38909104 - 38909036
Alignment:
Q  8 gttcccacttgagtttttgtttgaaaacacat-gaaaattacacatttaacttcaacagtagttaacta 75  Q
    |||||||||| || ||||||||||||||||||  ||||||| |||||||||  ||||||||| ||||||    
T  38909104 gttcccacttcagattttgtttgaaaacacataaaaaattaaacatttaaccccaacagtagctaacta 38909036  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 11758682 - 11758639
Alignment:
Q  29 tgaaaacacatgaaaattacacatttaacttcaacagtagttaa 72  Q
    |||||||| || ||| ||||||||||||||||||||||||||||    
T  11758682 tgaaaacatataaaatttacacatttaacttcaacagtagttaa 11758639  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 36944461 - 36944587
Alignment:
Q  19 agtttttgtttgaaaacacatgaaaattacacatttaacttcaacagtagttaactaccgtttgactacattcattttctttgttcttgaatggtagtta 118  Q
    |||||||| |||||||||  ||||||||||| ||||||| |||||||||| ||| || || | |||| | ||| |||| ||| |||| ||| || |||||    
T  36944461 agtttttgcttgaaaacatgtgaaaattacatatttaacatcaacagtagctaattatcgctcgacttccttcgtttt-ttttttctcgaacggcagtta 36944559  T
Q  119 gctatcgttgaagttaaatgtgtaattt 146  Q
     ||| |||| |||||| | |||||||||    
T  36944560 actaccgttaaagttatacgtgtaattt 36944587  T

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