View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3144R-Insertion-1 (Length: 848)

Name: NF3144R-Insertion-1
Description: NF3144R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3144R-Insertion-1
NF3144R-Insertion-1
[»] chr1 (1 HSPs)
chr1 (9-823)||(43502002-43502819)


Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 9 - 823
Target Start/End: Complemental strand, 43502819 - 43502002
Alignment:
Q  9 agagacataaacatagtaataataatcgtaatcgtacaaatgaaaaagacttacattaaccaagtaatggtgttcaaatgtttatttagttaccctctnn 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  43502819 agagacctaaacatagtaataataatcgtaatcgtacaaatgaaaaagacttacattaaccaagtaatggtgttcaaatgtttatttagtttccctctaa 43502720  T
Q  109 nnnnnnggtttaattagtttcatttaacgaaaaattatttaagagattctgagcttaatatgtagctgaaatacttctttatcataagttatttatcttt 208  Q
          |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43502719 aaaa--ggtttaattagtttcatttaacgacaaatcatttaagagattctgagcttaatatgtagctgaaatacttctttatcataagttatttatctct 43502622  T
Q  209 tagacgagtaaccgattgatagaatcnnnnnnnctaaaaatcgaagggttaacagaaaacaaatacttgcgttgcatgggaaaatgacacgtgttcatcg 308  Q
    ||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43502621 tagacgagtaatcgattgatagaatctttttttctaaaaatcgaagggttaacagaaaacaaatacttgcgttgcatgggaaaatgacacgtgttcatcg 43502522  T
Q  309 gcacgtgctgaattaggttttatttattgtgaagcttttgtggttttttcttttctctgttatgtttggggttgatgcacattgcacactgcacagcaca 408  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43502521 gcacgtgctgacttaggttttatttattgtgaaacttttgtggttttttcttttctctgttatgtttgggattgatgcacattgcacactgcacagcaca 43502422  T
Q  409 aaatctgttttccccacttggttttgttttctgtatatgataagctgtgagctgcttattgggccacataacccactcagaattcaacgctttatgcgtc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43502421 aaatctgttttccccacttggttttgttttctgtatatgataagctgtgagctgcttattgggccacataacccactcagaattcaacgctttatgcgtc 43502322  T
Q  509 caatca-nnnnnnnnctttcaaattgttaggtacatgaacaccagccattgacaaatttcttttgtgtggtagtttcatttccttttttcaaaaagaatt 607  Q
    ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43502321 caatcatttttttttctttcaaattgttaggtacatgaacaccagccattgacaaatttcttttgtgtggtagcttcatttccttttttcaaaaagaatt 43502222  T
Q  608 gtaactttaatttactcgtgtaacaactgtattactttctttttgtc---nnnnnnnnnnnnnngtgtactgctttctcttttactataaaaagaaatga 704  Q
    |||||||||||||||| | ||||||| ||||| ||||||||||| ||                 ||||||||||||||||||||||||||||||||||||    
T  43502221 gtaactttaatttactggagtaacaagtgtataactttctttttatcaaaaaaaaaaaaaaaaagtgtactgctttctcttttactataaaaagaaatga 43502122  T
Q  705 agtaatatactgtatttgttttttgacatgacagtaatatagataatgaagcatattttgtcatgcactcgtgcgtttgtatagaaagt-gggttatcaa 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||    
T  43502121 agtaatatactgtatttgttttttgacatgacagtaatatagataatgaagcatattttgtcatgcactcgtgcttttgtaaagaaaatggggttatcaa 43502022  T
Q  804 gttggaattggtatccatgc 823  Q
    ||||||||||||||||||||    
T  43502021 gttggaattggtatccatgc 43502002  T

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