View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3144R-Insertion-4 (Length: 290)
Name: NF3144R-Insertion-4
Description: NF3144R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3144R-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 2577206 - 2577485
Alignment:
| Q |
8 |
atccccataggaaataccaaaaattggagattacaaattttattaccgttttatacccaaaaattcaaagataccttaactaaaggtgttcatggatacg |
107 |
Q |
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| T |
2577206 |
atccccataggaaataccaaaaattggagattacaaattttattaccgttttatacccaaaaattcaaagataccttaactaaagatgttcatggatacg |
2577305 |
T |
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| Q |
108 |
agtcaacatgctccatttagtttatttagggttttgaataaatgacatgtggcaaaaaagaattcaatgacttagatttaaaattaaataaaacannnnn |
207 |
Q |
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| T |
2577306 |
agtcaatatgctccatttaattcatttaaggttttggataaatgacacgtggtaaaaaaaaattcaatgactcgaatttaaaattaaataaaacattttt |
2577405 |
T |
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| Q |
208 |
nnnatttaaaatacacagtaatttcatacgcttcactttcttttcttctcacgtatccagtactcacatccatggctgctcaa |
290 |
Q |
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| T |
2577406 |
tg---ttaaaataaacagtaatttcatacgcttcactttcttttcttctcacgtgtccagtactcacatccatggctgctcaa |
2577485 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 33669627 - 33669564
Alignment:
| Q |
113 |
acatgctccatttagtttatttagggttttgaataaatgacatgtggcaaaaaagaattcaatg |
176 |
Q |
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| T |
33669627 |
acatgctccatttagttcatttagggtcttaaatgaatgacatgtggcaaaaaagaattcaatg |
33669564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 10257743 - 10257815
Alignment:
| Q |
130 |
tatttagggttttgaataaatgacatgtggcaaaaaagaattcaatgacttagatttaaaattaaataaaaca |
202 |
Q |
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| T |
10257743 |
tatttagggtcttagatgaatgacatgtggcaaaaaataattaaatggttcagatttaaaaataaacaaaaca |
10257815 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 10031763 - 10031842
Alignment:
| Q |
121 |
catttagtttatttagggttttgaataaatgacatgtggcaaaaaagaattcaatgacttagatttaaaattaaataaaa |
200 |
Q |
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| T |
10031763 |
catttagtctatttaacgttttggatgaatgatatgtggcaaaaaaaaattcaacgatttagatttaaaaataaacaaaa |
10031842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 2515673 - 2515587
Alignment:
| Q |
116 |
tgctccatttagtttatttagggttttgaataaatgacatgtggcaaaaaagaattcaatgacttagatttaaaattaaataaaaca |
202 |
Q |
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| T |
2515673 |
tgctccatttaattaatttagggtcttggatgaatgacatatgggaaaaatagattcaatggttgagatttaaaaataaataaaaca |
2515587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 22536937 - 22536878
Alignment:
| Q |
131 |
atttagggttttgaataaatgacatgtggcaaaaaagaattcaatgacttagatttaaaat |
191 |
Q |
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| T |
22536937 |
atttagggtgttggatgaatgacatgtggtaaaaaa-aattcaatgattcagatttaaaat |
22536878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 33029601 - 33029540
Alignment:
| Q |
115 |
atgctccatttagtttatttagggttttgaataaatgacatgtggcaaaaaagaattcaatg |
176 |
Q |
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| T |
33029601 |
atgctccatttagttcatttagggtattggatgaaagacatgtggcaaaaacaaattcaatg |
33029540 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 49618185 - 49618105
Alignment:
| Q |
115 |
atgctccatttagtttatttagggttttgaataaatgacatgtggcaaaaaagaattcaatgacttagatttaaaattaaa |
195 |
Q |
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| T |
49618185 |
atgctccatttagtccatttaggggtttggattaaagacatgtggcaaacaaacatccaacgactgagattttaaattaaa |
49618105 |
T |
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