View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3144_low_1 (Length: 548)
Name: NF3144_low_1
Description: NF3144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3144_low_1 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 104 - 548
Target Start/End: Complemental strand, 35212950 - 35212506
Alignment:
| Q |
104 |
agtaccacttggtggcagaannnnnnncaacaggatgatggaaactggcttggtttaagggaagatgatatggttgaagaggatgtggaatttgaagtgg |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35212950 |
agtaccacttggtggcagaaattttttcaacaggatgatggaaactggcttggtttaagggaagatgatatggttgaagaggatgtggaatttgaagtgg |
35212851 |
T |
|
| Q |
204 |
aagaagagcaagaattgtctgaaaatgaaaagtttgaagcatggaagcaaagagcagaagctattatagatataagggaagcacaagaagataggaagaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35212850 |
aagaagagcaagaattgtctgaaaatgaaaagtttgaagcatggaagcaaagagcagaagctattatagatataagggaagcacaagaagataggaagaa |
35212751 |
T |
|
| Q |
304 |
tcaagaccatagaaaatgggaagactggcttttggaggatgaagatgttnnnnnnnnnnnnnnnnnnnnttcttcttcttgggagagtggaatgaaagat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35212750 |
tcaagaccatagaaaatgggaagactggcttttggaagatgaagatgttagcagcagcagcagcagcagttcttcttcttgggagagtggaatgaaagat |
35212651 |
T |
|
| Q |
404 |
tatagggaggagttacgaggcgaggatgatgatttcaacaaaaataatggggttgtacagtctgttaagtatttgatttttggaagagaaaatggtgata |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35212650 |
tatagggaggagttacgaggcgaggatgatgatttcaacgaaaataatggggttgtacagtctgttaagtatttgatttttggaagagaaaatggtgata |
35212551 |
T |
|
| Q |
504 |
atgatgatgatatgctttatgaagaccgtgtttttaactatgctt |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35212550 |
atgatgatgatatgctttatgaagaccgtgtttttaactatgctt |
35212506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 35213020 - 35212982
Alignment:
| Q |
34 |
gctttcatttcaaaaccaacgcttcactaccttcatttc |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35213020 |
gctttcatttcaaaaccaacgcttcactaccttcatttc |
35212982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University