View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3144_low_2 (Length: 413)
Name: NF3144_low_2
Description: NF3144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3144_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 39987657 - 39987253
Alignment:
| Q |
1 |
ccaacgcttcgaggagtgttggccattgagtgcaataagtgttgctaatatcaattatgtgaagtttagggttaccttccaatgcttctaagatagcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39987657 |
ccaacgcttcgaggagtgttggccattgagtgcaataagtgttgctaatatcaattatgtgaagtttagggttaccttccaatgcttctaagatagcacc |
39987558 |
T |
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| Q |
101 |
gttagctgccacgtgtccaaacgttgtccatggactaacttcttggaacttcaacaacatcttcctcgttgaatcaaaggaacatgttttttccgacgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39987557 |
gttagctgccacgtgtccaaacgttgtccatggactaacttcttggaacttcaacaacatcttcctcgttgaatcaaaggaacatgttttttccgacgcg |
39987458 |
T |
|
| Q |
201 |
gttgttaaggttttgtaggttctatctcccgcgtcgttcatgcgactaaacaaagcttgaagaaaataagatgaaagtttttgatctgtgtcaccatatg |
300 |
Q |
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| T |
39987457 |
gttgttaaggttttgtaggttctatctcccgcgtcgttcatgcgactaaacaaagcttgaagaaaataagatgaaagtttttgatctgtgtcaccatatg |
39987358 |
T |
|
| Q |
301 |
gggtactaagctcgtttagcatccacatgagttgttggattcggtttgtgtgattgtcggaaaatgcacgtgcagtttcaaggaggatgttttgtgacca |
400 |
Q |
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| T |
39987357 |
gggtactaagctcgtttagcatccacatgagttgttggattcggtttgtgttattgtcggaaaatgcacgtgcagtttcaaggaggatgttttgtgacca |
39987258 |
T |
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| Q |
401 |
agagt |
405 |
Q |
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||||| |
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| T |
39987257 |
agagt |
39987253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 42485795 - 42485925
Alignment:
| Q |
21 |
ggccattgagtgcaataagtgttgctaatatcaattatgtgaagtttagggttaccttccaatgcttctaagatagcaccgttagctgccacgtgtccaa |
120 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||| | || || || |||||||| |||||||| || | ||| |||||||||| |
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| T |
42485795 |
ggccattgagtacaaagggtgttgctaatatcaattatgtgaagttttttctctccatctaaagcttctaaaatagcaccatttgatgctacgtgtccaa |
42485894 |
T |
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| Q |
121 |
acgttgtccatggactaacttcttggaactt |
151 |
Q |
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| T |
42485895 |
aagttgtccatggacttacctcttgaaactt |
42485925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 5365677 - 5365824
Alignment:
| Q |
1 |
ccaacgcttcgaggagtgttggccattgagtgcaataagtgttgctaatatcaattatgtgaagtttagggttaccttccaatgcttctaagatagcacc |
100 |
Q |
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|||||||||| | || |||||||| ||||||||||||||||| ||||||||||||||||| || || | | |||||| || |||||||| || || || |
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| T |
5365677 |
ccaacgcttcaaaaagagttggccactgagtgcaataagtgttactaatatcaattatgtgcagcttggaatcaccttcgaaggcttctaaaatggcgcc |
5365776 |
T |
|
| Q |
101 |
gttagctgccacgtgtccaaacgttgtccatggactaacttcttggaa |
148 |
Q |
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|| ||| || || || || |||||||| ||||||||||||||||| |
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| T |
5365777 |
attgcatgcgacatggccgaaggttgtccacggactaacttcttggaa |
5365824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 5365952 - 5366013
Alignment:
| Q |
276 |
agtttttgatctgtgtcaccatatggggtactaagctcgtttagcatccacatgagttgttg |
337 |
Q |
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|||||||| ||| |||||||||| |||| || || ||||| |||||||||||||||||||| |
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| T |
5365952 |
agtttttgttctatgtcaccataaggggagcttagttcgttaagcatccacatgagttgttg |
5366013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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