View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3144_low_3 (Length: 259)
Name: NF3144_low_3
Description: NF3144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3144_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 38275924 - 38275669
Alignment:
| Q |
1 |
tatacaaacacaaagttatatcatttagttagctctgtgggaataatgaatccaagttggtatagaattcgtgatatcccacagttaccaatgaatctaa |
100 |
Q |
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| T |
38275924 |
tatacaaacacaaagttatatcatttagttagctctgtgggaataatgaatccaagttggtatagaattcgtgatatcccacagttaccaatgaatctaa |
38275825 |
T |
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| Q |
101 |
aaagtatttacactactagaaactcacgtttttcctgcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatt |
200 |
Q |
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| T |
38275824 |
aaattatttacactactagaaactcacgtttttcctgcggaaattattccacaggaattcctgagtattttgctgccatttccttt--ttgaacgaaatt |
38275727 |
T |
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| Q |
201 |
tcctgcagtaatattaccttttaactcttttaatgtaaacaaaactttgttagtatta |
258 |
Q |
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| T |
38275726 |
tcctgcagtaatattaccttttaactcttttaatgtaaacaaaactttgttagtatta |
38275669 |
T |
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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 11753688 - 11753599
Alignment:
| Q |
131 |
tttcctgcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag-taatattacctt |
220 |
Q |
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| T |
11753688 |
tttccagcggaagttattccgcaggaattcctgaggattttgctaccatttcttttac-tgaacgaaatttcctgcagataatatttcctt |
11753599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 11815399 - 11815464
Alignment:
| Q |
137 |
gcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttc |
202 |
Q |
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| T |
11815399 |
gcggaaattattccgcaggaattcctgaggattttactgtcatttcttttacttgaacaaaatttc |
11815464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 32235891 - 32235839
Alignment:
| Q |
156 |
aattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag |
208 |
Q |
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| T |
32235891 |
aattcctgaggattttgctgccattttctttactctaacgaaatttcctgcag |
32235839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 39917142 - 39917081
Alignment:
| Q |
147 |
ttccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag |
208 |
Q |
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|||| |||||| |||| || ||||| ||| |||||||||| ||||||||||||||||||||| |
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| T |
39917142 |
ttccgcaggaagtcctaaggattttactgtcatttcctttgcttgaacgaaatttcctgcag |
39917081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 36087050 - 36087009
Alignment:
| Q |
131 |
tttcctgcggaaattattccacaggaattcctgagtattttg |
172 |
Q |
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| T |
36087050 |
tttcctgcggaaattaatccacaggaatgcctgaggattttg |
36087009 |
T |
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