View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3144_low_4 (Length: 236)
Name: NF3144_low_4
Description: NF3144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3144_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 23155223 - 23155021
Alignment:
| Q |
18 |
agaaatagaggtataaagtccttatgtatgattacaagaactaagaaatattatttataataaagtatgaaataatttgtaatttaataattgtattgaa |
117 |
Q |
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| T |
23155223 |
agaaatagaggtataaagtccttatatatgattacaagaactaagaaatattatttataataaagtatgaaataatttgtaatttaatagttgtattgaa |
23155124 |
T |
|
| Q |
118 |
ccctattgttggaattattttgttattaattttcttccttttcaaatatcacataccatgcaagtatggctttgtactctataatgattggtaatgaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23155123 |
ccctattgttggaattattttgttattaattttcttccttttcaaatatcacataccatgcaagtatggctttgtactctataatgattggtaatgaaat |
23155024 |
T |
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| Q |
218 |
aaa |
220 |
Q |
| |
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||| |
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| T |
23155023 |
aaa |
23155021 |
T |
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