View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_high_15 (Length: 249)
Name: NF3145_high_15
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_high_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 32027411 - 32027656
Alignment:
| Q |
12 |
atgaaccttaatcatgtagtacaataaaaatttaacaattattcctatattaatgggaaatcatattttcacaacctacctatataatcatagataatga |
111 |
Q |
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| T |
32027411 |
atgaaccttaatcgtgtagtacaataaaaatttaacaattatttctatattaatgggaaatcatattttcacaacctacctatataatcatagataatga |
32027510 |
T |
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| Q |
112 |
taatag--gnnnnnnnntcctattacgaacataggagaaacatgcacaacatgcttattgcatttg-----gaagtacatacgctcatcttgcactatc- |
203 |
Q |
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| T |
32027511 |
taatagaaaaaaaaaaatcctattacgaacataggagaaacatgcacaacatgcttattgcatttggaacagaagtacatacgctcatcttgcactatct |
32027610 |
T |
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| Q |
204 |
tttttgtcgcaaacacatgcattttaccgtcaatcatctgtatcta |
249 |
Q |
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| T |
32027611 |
tttttgtcgcaaacacatgcattttatcgtcaatcatctgtatcta |
32027656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 32026708 - 32026620
Alignment:
| Q |
30 |
gtacaataaaaatttaacaattattcctatattaatgggaaatcatattttcacaacctacctatataatcatagataatgataatagg |
118 |
Q |
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||||| |||||| |||||||||||| || |||||||||||| | ||||||| || |||||||||||||||||| | ||| ||||||||| |
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| T |
32026708 |
gtacattaaaaaattaacaattattactttattaatgggaagtaatattttaacgacctacctatataatcatggctaaagataatagg |
32026620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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