View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_high_18 (Length: 232)
Name: NF3145_high_18
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12837848 - 12837609
Alignment:
| Q |
1 |
gcttcgacttttatttacagtaatgttcccaacgaagaatgtagaagcacaaagttgtagcggt-----------------taatacagaatgcgatgct |
83 |
Q |
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| T |
12837848 |
gcttcgacttttatttacagtaatgttcccaacgaagaatgtagaagcacaaagttgtagcggtgctgtttgtataagatttaatacagaatgcgatgct |
12837749 |
T |
|
| Q |
84 |
ggttgtcattgtcacacggctgggacagagcaaactggtgtttgtcgtccgtctgtagaaggtatggaaatggaagagcaacacccttacctatgtcagt |
183 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
12837748 |
ggttgttattgtcacacggctgggacagagcaaactggtgtttgtcgtccgaatgtagatggtatggaaatggaagagcgacatccttacctttgtcagt |
12837649 |
T |
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| Q |
184 |
ctcatgatgaatgcaacaagaagggaagtgggagcttttg |
223 |
Q |
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| T |
12837648 |
ctcatgatgaatgcaacaagaagggaagtgggagcttttg |
12837609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 30636136 - 30636091
Alignment:
| Q |
13 |
atttacagtaatgttcccaacgaagaatgtagaagcacaaagttgt |
58 |
Q |
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| T |
30636136 |
atttacagtaatgttcccaatggagaacgtagaagcacaaagttgt |
30636091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 20471981 - 20472032
Alignment:
| Q |
14 |
tttacagtaatgttcccaacgaagaatgtagaagcacaaagttgtagcggtt |
65 |
Q |
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| T |
20471981 |
tttacagtaatgttcccgatgaagaaggtagaagcacaaagttgtatcggtt |
20472032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 15107806 - 15107749
Alignment:
| Q |
163 |
aacacccttacctatgtcagtctcatgatgaatgcaacaagaagggaagtgggagctt |
220 |
Q |
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||||||| |||||||||| ||||||| ||||||| ||| ||||||||||||||||| |
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| T |
15107806 |
aacacccaaacctatgtcaatctcatgtcgaatgcaccaaaaagggaagtgggagctt |
15107749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 5951141 - 5951093
Alignment:
| Q |
175 |
tatgtcagtctcatgatgaatgcaacaagaagggaagtgggagcttttg |
223 |
Q |
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||||||| ||||||| |||||||| || |||||||||||||||||||| |
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| T |
5951141 |
tatgtcactctcatgttgaatgcatgaacaagggaagtgggagcttttg |
5951093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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