View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3145_high_24 (Length: 202)
Name: NF3145_high_24
Description: NF3145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3145_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 11642326 - 11642518
Alignment:
| Q |
1 |
tcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatctttgcaaaagctttgtttcgtagatgtagatcaaggaagtgga |
100 |
Q |
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| T |
11642326 |
tcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatctttgcaaaagctttgtttcgtagatgtagatcaaggaagtgga |
11642425 |
T |
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| Q |
101 |
gcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaatgaggaaagaagatggtgcttttttgtgttcatct |
193 |
Q |
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| T |
11642426 |
gcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaatgaggaaagaagatggtgctgctttgtgttcatct |
11642518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 11623820 - 11624012
Alignment:
| Q |
1 |
tcatttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatctttgcaaaagctttgtttcgtagatgtagatcaaggaagtgga |
100 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||||||||||| || |
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| T |
11623820 |
tcatttccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctatcattgcaaaagctttgtttcatagaggtagatcaaggaagcaga |
11623919 |
T |
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| Q |
101 |
gcattgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaatgaggaaagaagatggtgcttttttgtgttcatct |
193 |
Q |
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| T |
11623920 |
gccttgatggtagagttaggaaaactcactcaacttaggaggctaggcataagaaaaatgaggaaagaagacggtgctgctttgtgttcatct |
11624012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 11603625 - 11603438
Alignment:
| Q |
5 |
ttccactcaaagaatggcttcaaggtggctgcacctataggaaacatgcaatctttgcaaaagctttgtttcgtagatgtagatcaaggaagtggagcat |
104 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||||||||| ||| | |
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| T |
11603625 |
ttccactcaaggcatggcttcaaggtggctgcacctataggaaacatgctatcattgcagaagctttgtttcatagaggtagatcaaggaagtgcagcct |
11603526 |
T |
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| Q |
105 |
tgatggtagagttaggaagactcactcaacttagaaagctaggcattagaaaaatgaggaaagaagatggtgcttttttgtgttcatc |
192 |
Q |
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| T |
11603525 |
tgatggttgagctaggaaaacttactcaacttaggaggctaggcataagaaaaatgaggaaagaagatggtgctgctttgtgttcatc |
11603438 |
T |
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